EY679777

Overview
NameEY679777
Unique NameEY679777
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1005
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679777 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.352e-29
Identity = 67/154 (43.51%), Postives = 92/154 (59.74%), Query Frame = 3
Query:  111 SSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYQHGKLLALSEADKPY 569
            ++ P   ++GNF PVP E P   +L V G +P+C+ G +VR G NP   PV+G+H FDGDGM+H +R  +G  +Y  RF  T+RL QE   G   F K IG+L G  G+  + +   R    ++D + G G AN  LVY +G LLA+SE D PY
Sbjct:  176 TADPAVQIAGNFFPVP-EKPVVHNLPVTGTVPECIQGVYVRNGANPLHKPVSGHHLFDGDGMVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAKLMLFNTRGLFGLVDPTGGLGVANAGLVYFNGHLLAMSEDDLPY 328          

HSP 2 Score: 23.8682 bits (50), Expect = 2.352e-29
Identity = 10/26 (38.46%), Postives = 17/26 (65.38%), Query Frame = 1
Query:  574 VKVLENGDLQTLGMLD*DKKITTFLL 651
            VKV + GDL+T G  D D ++ + ++
Sbjct:  330 VKVTQTGDLETSGRYDFDGQLKSTMI 355          
BLAST of EY679777 vs. ExPASy Swiss-Prot
Match: CCD4_ARATH (Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.802e-27
Identity = 67/158 (42.41%), Postives = 87/158 (55.06%), Query Frame = 3
Query:  111 SSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSY----GNGTANTALVYQHGKLLALSEADKPYA 572
            S  P H LS NFAPV DE PPT    + G LP  LNG ++R GPNP+F P   YH FDGDGM+H ++I +GKAT  SR+V+T +   E+  G      +    G  G+     +      +VL   Y    G G ANT+L +   +L AL E+D PYA
Sbjct:  104 SVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGAYIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNV--FSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYA 259          

HSP 2 Score: 24.6386 bits (52), Expect = 7.802e-27
Identity = 9/21 (42.86%), Postives = 16/21 (76.19%), Query Frame = 1
Query:  574 VKVLENGDLQTLGMLD*DKKI 636
            V++ E+GD++T+G  D D K+
Sbjct:  260 VRLTESGDIETIGRYDFDGKL 280          
The following BLAST results are available for this feature:
BLAST of EY679777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
NCED9_ARATH2.352e-2943.519-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
CCD4_ARATH7.802e-2742.41Probable carotenoid cleavage dioxygenase 4, chloro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-003-H06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679777 ID=EY679777; Name=EY679777; organism=Citrus sinensis; type=EST; length=1005bp
CGTCGTAGCACGAAATGCCCTTTTGGCGGTGGATCCGAAACCGAAGAATG
GAGTGACTCCTTAAAGTGATAGACTTTGTGGAGAAACTGATAGTGAAGTG
GATGTACGATTCTTCACAGCCTCTTCATTATCTCTCCGGTAACTTCGCTC
CAGTTCCTGACGAGACTCCTCCTACTAAAGACCTCCACGTCATCGGCCAT
CTCCCCGATTGCTTGAATGGGGAGTTTGTCAGGGTTGGTCCTAATCCCAA
GTTTGCCCCTGTGGCCGGATACCACTGGTTTGATGGAGATGGCATGATTC
ATGGTCTGCGCATCAAAGACGGAAAGGCTACATATGTCTCCCGTTTTGTG
AGGACTTCACGTCTTAAACAGGAAGAATTTTTCGGAGGTGCTAAATTTAT
GAAGATTGGAGACCTTAAGGGGCTATTTGGATTACTCATGGTTAACATGC
AAATGCTTAGAGCAAAGTTGAAAGTACTGGATGTTTCATATGGAAATGGG
ACAGCTAATACAGCTCTTGTATATCAACATGGGAAACTTCTAGCGCTCTC
AGAGGCGGACAAACCATATGCCCGTCAAAGTTCTGGAAAATGGAGATCTG
CAAACACTGGGTATGCTTGACTAGGACAAGAAAATAACAACTTTCCTTTT
ATGGCCATCCAAAAGGTGGATCCATATCCTGGGCGAGAAGGTTTACCTTT
GGGATATGCCAACCCCCCACCATATAATCCAAATAAAAAATTATTTTAAA
AGGGAGGGTTTCATGGGATGGATCCTGGAACCAATAACCGGTAATAAAAA
CCCCATCGGGGAGGCCGAGAATTTGGAAATTAAAGGAGAAATTTATGGCT
ATTTTTTGGGGGGATTTTCCCCGCGTGGTGTTTTCCAAAACGGAAGGAGA
ATTGGGGGGAAAAAGAAAAAACATGCTTGTATATTTTCAACTTTTTTTGG
GGAAAGCAAAAAAAAAGTGCTTTGGTTTTTTTGGGTTTTTTTTTTTCTTC
CCCCC
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