EY679696

Overview
NameEY679696
Unique NameEY679696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1003
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_THET2 (Pyridoxal biosynthesis lyase pdxS OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=pdxS PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.960e-16
Identity = 51/102 (50.00%), Postives = 58/102 (56.86%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK-VERFASR 313
            AP++LV      GRLPVV+F            +MM LG D            DP KRA+AIVRAV HY+DPEVLAEVS  LGE MVG+NL   K  ER A R
Sbjct:  190 APFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRAVAHYNDPEVLAEVSEDLGEPMVGINLDQLKEEERLAKR 291          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDX1_SUBDO (Probable pyridoxine biosynthesis SNZERR OS=Suberites domuncula GN=SNZERR PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.551e-15
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 2
Query:   14 PYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 313
            P DL+ +T +LGRLPVV+F            ++MQLG D            +P KRA+A+V+AVTHY+DP+VLA+VS  LG+ MVGLN  +H  E++A R
Sbjct:  202 PLDLLQKTAKLGRLPVVNFAAGGLATPADVSLLMQLGVDGVFVGSGIFKSGNPEKRAKAMVQAVTHYNDPKVLADVSEDLGDPMVGLN-CEHLSEKWAQR 300          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_HERA2 (Pyridoxal biosynthesis lyase pdxS OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=pdxS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.454e-15
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 280
            APY+LV Q  +LGRLPVV+F            +MMQLG D            +P KRA+AIV A TH+ D ++LAE+S  LGEAMVG+N+
Sbjct:  190 APYELVKQIAELGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKSGNPAKRAKAIVEATTHFRDAKLLAEISRNLGEAMVGINI 279          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_MYCPA (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium paratuberculosis GN=pdxS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.892e-15
Identity = 46/102 (45.10%), Postives = 59/102 (57.84%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 313
            APY+LV++  + G+LPV  F            MMMQLG +            DP +RA AIV+A T Y DP+VLA+VS GLGEAMVG+N+    + ER A R
Sbjct:  200 APYELVVEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGDPAQRAAAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEQIAQPERLAER 301          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_MYCA1 (Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium avium (strain 104) GN=pdxS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.892e-15
Identity = 46/102 (45.10%), Postives = 59/102 (57.84%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 313
            APY+LV++  + G+LPV  F            MMMQLG +            DP +RA AIV+A T Y DP+VLA+VS GLGEAMVG+N+    + ER A R
Sbjct:  200 APYELVVEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGDPAQRAAAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEQIAQPERLAER 301          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_NOCFA (Pyridoxal biosynthesis lyase pdxS OS=Nocardia farcinica GN=pdxS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.695e-15
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 286
            APY+LV +  + G+LPVV F            MMMQLG +            +P +RA+AIV+A T Y DP+VLA+VS GLGEAMVG+N+ +
Sbjct:  203 APYELVREVAETGKLPVVLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGNPAQRAEAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEE 294          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_HELMI (Pyridoxal biosynthesis lyase pdxS OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=pdxS PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.695e-15
Identity = 42/90 (46.67%), Postives = 54/90 (60.00%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 280
            APY+LV    + GRLPVV+F            +MMQLG D            DP++RA+AIV A THY+DP+V+AEVS  LGE MVG+ +
Sbjct:  192 APYELVCLVAETGRLPVVNFAAGGIATPADAALMMQLGVDGVFVGSGIFKSGDPIRRAKAIVAATTHYNDPKVIAEVSKDLGEPMVGIEI 281          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_DESHY (Pyridoxal biosynthesis lyase pdxS OS=Desulfitobacterium hafniense (strain Y51) GN=pdxS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.005e-14
Identity = 44/88 (50.00%), Postives = 54/88 (61.36%), Query Frame = 2
Query:   14 PYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLN 277
            PYDLV+   +  RLPVV+F            +MMQLG +            DP KRAQAIV+AVT+Y DP+VLAE+S  LGEAMVG+N
Sbjct:  191 PYDLVLYVHEHKRLPVVNFAAGGVATPGDAALMMQLGAEGVFVGSGIFKSGDPEKRAQAIVKAVTNYQDPKVLAELSEDLGEAMVGIN 278          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_DESHD (Pyridoxal biosynthesis lyase pdxS OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=pdxS PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.005e-14
Identity = 44/88 (50.00%), Postives = 54/88 (61.36%), Query Frame = 2
Query:   14 PYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLN 277
            PYDLV+   +  RLPVV+F            +MMQLG +            DP KRAQAIV+AVT+Y DP+VLAE+S  LGEAMVG+N
Sbjct:  191 PYDLVLYVHEHKRLPVVNFAAGGVATPGDAALMMQLGAEGVFVGSGIFKSGDPEKRAQAIVKAVTNYQDPKVLAELSEDLGEAMVGIN 278          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_STRCO (Pyridoxal biosynthesis lyase pdxS OS=Streptomyces coelicolor GN=pdxS PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.313e-14
Identity = 44/102 (43.14%), Postives = 58/102 (56.86%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 313
            APY+LV +  +LGRLPVV F            +M QLG +            DP KRA AIV+A T Y DP+++A+ S  LGEAMVG+N     + ER+A+R
Sbjct:  200 APYELVKEVSELGRLPVVLFSAGGVATPADAALMRQLGAEGVFVGSGIFKSGDPAKRAAAIVKATTFYDDPKIIADASRNLGEAMVGINCDTLPETERYANR 301          
The following BLAST results are available for this feature:
BLAST of EY679696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PDXS_THET26.960e-1650.00Pyridoxal biosynthesis lyase pdxS OS=Thermus therm... [more]
PDX1_SUBDO1.551e-1546.00Probable pyridoxine biosynthesis SNZERR OS=Suberit... [more]
PDXS_HERA23.454e-1547.78Pyridoxal biosynthesis lyase pdxS OS=Herpetosiphon... [more]
PDXS_MYCPA5.892e-1545.10Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_MYCA15.892e-1545.10Pyridoxal biosynthesis lyase pdxS OS=Mycobacterium... [more]
PDXS_NOCFA7.695e-1545.65Pyridoxal biosynthesis lyase pdxS OS=Nocardia farc... [more]
PDXS_HELMI7.695e-1546.67Pyridoxal biosynthesis lyase pdxS OS=Heliobacteriu... [more]
PDXS_DESHY1.005e-1450.00Pyridoxal biosynthesis lyase pdxS OS=Desulfitobact... [more]
PDXS_DESHD1.005e-1450.00Pyridoxal biosynthesis lyase pdxS OS=Desulfitobact... [more]
PDXS_STRCO1.313e-1443.14Pyridoxal biosynthesis lyase pdxS OS=Streptomyces ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-003-A06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679696 ID=EY679696; Name=EY679696; organism=Citrus sinensis; type=EST; length=1003bp
CCACGCGTCCGCGCCGTACGACTTGGTGATGCAGACGAAGCAGCTGGGGC
GGTTGCCGGTGGTGCACTTCGCAGCGGGAGGAGTGGCGACGCCGGCGGAT
GCAGCGATGATGATGCAACTTGGATGCGACGGAGTGTTTGTCGGGTCGGG
CGTGTTTAAGAGCGGGGACCCGGTGAAGCGGGCCCAGGCAATTGTACGGG
CGGTGACTCATTACAGTGACCCGGAGGTGTTGGCGGAGGTGAGCTGCGGG
TTGGGCGAGGCCATGGTGGGTCTTAATTTGAGTGACCACAAGGTTGAGAG
GTTCGCTAGTCGCTCCGAATAAATGAAAGAGATGAGGTCCCGAAGCCCTT
TATTAATCATTATCTGTAAGCTTTTTCCTTTTTCTTTAAATCTTATGTAG
TAAGCGGGATTCAAACTTCAAACCGCAGTAGTTGTCGTAATGTTTTCTTT
GGGTGTTAGTTCAATTTACACAACTTGTCAATTGAAAACTCTGTTCTTCT
TTACCAATATGAATATTTTACGCTCGGAATGTTTGTTGCGGAGGTTGATG
ATATGCCTGGCTTTTTTTCAATAATGAAAATATTTGCAGCAAGGGATCTT
TTTTTTTTTTTTTTTTTTAAATATTATTTAAAAGACCATGATGTATCCTC
ATGCCTATGTTGTTTTGCTTTTATGCCGTTTATTTCTTTGACTGGGAATT
TATGACTAATTTTTTCGGCCTTTCCAAACTTTTTTTGGTAAATTTTGGTC
CCCATCTGGCAAGGGAGGCCCCCAATATTTAAAATTTGGCTGGGCCGTTG
TTGGGCCTAATGGTTTAAATAATGGCAAAAGTTTAAAAAATGTTTTCTTT
CCAAGGGGGAGGGGTTTTGTTTTTAGGTTTTTTTGGTCCTTTTTTTTTTT
TTGTTCCCCCGGGTGAGCCCAATTCCTCTTTTTTCCCTTTGGGTATAAGG
GGGCGCAGCGGGGAAAATGGGGAAAAGGCCCTCCCGCGGCCCCCCTCTAA
ACT
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