EY679696

Overview
NameEY679696
Unique NameEY679696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1003
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_DEHE1 (Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoides ethenogenes (strain 195) GN=pdxS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.239e-14
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 2
Query:    8 SAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 313
            +AP +LV++  + G+LPVV+F            +MMQLG D            DP   A+A+V+AVTHY D +VLAE+S GLG+AM GL++   + ++  SR
Sbjct:  189 NAPLELVLELHKTGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSDPAAMAKAVVKAVTHYKDAKVLAEISKGLGDAMPGLDIKQIEPDKLISR 290          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_THETN (Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerobacter tengcongensis GN=pdxS PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.924e-14
Identity = 43/90 (47.78%), Postives = 53/90 (58.89%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 280
            APYDLV    Q G+LPVV+F            +MMQLG D            +P K A AIV+AVT+Y  PE+LAEVS GLGEAM G+++
Sbjct:  189 APYDLVKYVAQHGKLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSQNPEKMAAAIVKAVTYYDKPEILAEVSEGLGEAMTGIDI 278          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_THEPX (Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerobacter sp. (strain X514) GN=pdxS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.819e-14
Identity = 48/103 (46.60%), Postives = 60/103 (58.25%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS--DHKVERFASR 313
            APYDLV    Q GRLPVV+F            +MMQLG D            +P K A+AIV+AVT+Y  PE+LAEVS GLGEAM  +++   D K + +ASR
Sbjct:  189 APYDLVKYVAQHGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSQNPEKMAEAIVKAVTYYDKPEILAEVSEGLGEAMQSIDIRKLDEK-DLYASR 290          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_SALAI (Pyridoxal biosynthesis lyase pdxS OS=Salinispora arenicola (strain CNS-205) GN=pdxS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.819e-14
Identity = 46/102 (45.10%), Postives = 58/102 (56.86%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL-----SDHKVER 301
            APY+LV +  + G+LPVV F            MMMQLG +            +P +RA AIV+A T + DPEVLA+VS GLGEAMVG+N+     SD   ER
Sbjct:  203 APYELVREIAETGKLPVVLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGNPAERAAAIVKATTFHDDPEVLAKVSRGLGEAMVGINVDQIPQSDRLAER 304          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_LEIXX (Pyridoxal biosynthesis lyase pdxS OS=Leifsonia xyli subsp. xyli GN=pdxS PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.819e-14
Identity = 44/92 (47.83%), Postives = 53/92 (57.61%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 286
            APY+LV +  + G LPVV F            MMMQLG D            +P +RA AIVRA T   DP V+AEVS GLGEAMVG+N++D
Sbjct:  196 APYELVAEIAETGTLPVVLFTAGGVATPADAAMMMQLGADGVFVGSGIFKSGNPERRAAAIVRATTFSDDPSVVAEVSRGLGEAMVGINVAD 287          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_DICT6 (Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.988e-14
Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 280
            AP +LV++TK+LGRLPVV+F            +MM LG D            DP KRA+AIV AVT+Y DP VLAE+S  LGE M G+++
Sbjct:  192 APLELVIETKKLGRLPVVNFAAGGIATPADAALMMHLGADGVFVGSGIFKSKDPRKRARAIVLAVTYYDDPYVLAEISEDLGEPMPGIDV 281          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_DEIRA (Pyridoxal biosynthesis lyase pdxS OS=Deinococcus radiodurans GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.988e-14
Identity = 46/102 (45.10%), Postives = 58/102 (56.86%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE-RFASR 313
            APYDLV      G+LPVV+F            +MMQLG D            +P +RAQAIVRAVTH+ +P++LAEVS  LG  M G+N+ +   E R ASR
Sbjct:  204 APYDLVQYVHAHGQLPVVNFAAGGVATPADAALMMQLGLDGVFVGSGIFKSANPERRAQAIVRAVTHFQNPDILAEVSEDLGAPMTGINIDELIPEARLASR 305          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_CLONO (Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Clostridium novyi GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.988e-14
Identity = 45/101 (44.55%), Postives = 58/101 (57.43%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 313
            APYDLV   ++ G+LPV++F            +MMQLGCD            +P KRA+AIV AV +Y++P  +AEVS GLGEAM GL +    V  FA R
Sbjct:  133 APYDLVEYVRENGKLPVINFAAGGIATPADAALMMQLGCDGVFVGSGIFKSENPAKRAKAIVEAVKNYNNPLKIAEVSEGLGEAMTGLEIDKLDV-TFAER 232          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_CLOCE (Pyridoxal biosynthesis lyase pdxS OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.988e-14
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 286
            APYDL++   + G+LPV++F            +MMQLGCD            DP KRA+AIV+A T+Y+DP+++AEVS  LG AM  +++ +
Sbjct:  189 APYDLILYVHENGKLPVINFAAGGIATPADAALMMQLGCDGVFVGSGIFKSSDPAKRAKAIVKATTYYNDPQIIAEVSEELGTAMDSIDVRE 280          
BLAST of EY679696 vs. ExPASy Swiss-Prot
Match: PDXS_STRAW (Pyridoxal biosynthesis lyase pdxS OS=Streptomyces avermitilis GN=pdxS PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.514e-14
Identity = 42/102 (41.18%), Postives = 58/102 (56.86%), Query Frame = 2
Query:   11 APYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 313
            APY++V +  +LG+LPVV F            +M QLG +            DP KRA AIV+A T Y DP+++A+ S  LGEAMVG+N     + ER+A+R
Sbjct:  201 APYEIVKEVAELGKLPVVLFSAGGVATPADAALMRQLGAEGVFVGSGIFKSGDPAKRAAAIVKATTFYDDPKIIADASRNLGEAMVGINCDTLPEAERYANR 302          
The following BLAST results are available for this feature:
BLAST of EY679696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
PDXS_DEHE12.239e-1440.20Pyridoxal biosynthesis lyase pdxS OS=Dehalococcoid... [more]
PDXS_THETN2.924e-1447.78Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerob... [more]
PDXS_THEPX3.819e-1446.60Pyridoxal biosynthesis lyase pdxS OS=Thermoanaerob... [more]
PDXS_SALAI3.819e-1445.10Pyridoxal biosynthesis lyase pdxS OS=Salinispora a... [more]
PDXS_LEIXX3.819e-1447.83Pyridoxal biosynthesis lyase pdxS OS=Leifsonia xyl... [more]
PDXS_DICT64.988e-1447.78Pyridoxal biosynthesis lyase pdxS OS=Dictyoglomus ... [more]
PDXS_DEIRA4.988e-1445.10Pyridoxal biosynthesis lyase pdxS OS=Deinococcus r... [more]
PDXS_CLONO4.988e-1444.55Pyridoxal biosynthesis lyase pdxS (Fragment) OS=Cl... [more]
PDXS_CLOCE4.988e-1441.30Pyridoxal biosynthesis lyase pdxS OS=Clostridium c... [more]
PDXS_STRAW6.514e-1441.18Pyridoxal biosynthesis lyase pdxS OS=Streptomyces ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-003-A06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679696 ID=EY679696; Name=EY679696; organism=Citrus sinensis; type=EST; length=1003bp
CCACGCGTCCGCGCCGTACGACTTGGTGATGCAGACGAAGCAGCTGGGGC
GGTTGCCGGTGGTGCACTTCGCAGCGGGAGGAGTGGCGACGCCGGCGGAT
GCAGCGATGATGATGCAACTTGGATGCGACGGAGTGTTTGTCGGGTCGGG
CGTGTTTAAGAGCGGGGACCCGGTGAAGCGGGCCCAGGCAATTGTACGGG
CGGTGACTCATTACAGTGACCCGGAGGTGTTGGCGGAGGTGAGCTGCGGG
TTGGGCGAGGCCATGGTGGGTCTTAATTTGAGTGACCACAAGGTTGAGAG
GTTCGCTAGTCGCTCCGAATAAATGAAAGAGATGAGGTCCCGAAGCCCTT
TATTAATCATTATCTGTAAGCTTTTTCCTTTTTCTTTAAATCTTATGTAG
TAAGCGGGATTCAAACTTCAAACCGCAGTAGTTGTCGTAATGTTTTCTTT
GGGTGTTAGTTCAATTTACACAACTTGTCAATTGAAAACTCTGTTCTTCT
TTACCAATATGAATATTTTACGCTCGGAATGTTTGTTGCGGAGGTTGATG
ATATGCCTGGCTTTTTTTCAATAATGAAAATATTTGCAGCAAGGGATCTT
TTTTTTTTTTTTTTTTTTAAATATTATTTAAAAGACCATGATGTATCCTC
ATGCCTATGTTGTTTTGCTTTTATGCCGTTTATTTCTTTGACTGGGAATT
TATGACTAATTTTTTCGGCCTTTCCAAACTTTTTTTGGTAAATTTTGGTC
CCCATCTGGCAAGGGAGGCCCCCAATATTTAAAATTTGGCTGGGCCGTTG
TTGGGCCTAATGGTTTAAATAATGGCAAAAGTTTAAAAAATGTTTTCTTT
CCAAGGGGGAGGGGTTTTGTTTTTAGGTTTTTTTGGTCCTTTTTTTTTTT
TTGTTCCCCCGGGTGAGCCCAATTCCTCTTTTTTCCCTTTGGGTATAAGG
GGGCGCAGCGGGGAAAATGGGGAAAAGGCCCTCCCGCGGCCCCCCTCTAA
ACT
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