EY679667

Overview
NameEY679667
Unique NameEY679667
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679667 vs. ExPASy Swiss-Prot
Match: ACL6A_MOUSE (Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.280e-26
Identity = 63/184 (34.24%), Postives = 108/184 (58.70%), Query Frame = 3
Query:   24 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVG----RPRHTGVMVGMGQKDAYVG-------DEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 542
            +++  LV D G+  V+AG+AG+D P+  FP+ +G    R   + +M   G K    G       +  +  R  +    P+++G+V +WD  + I  HT+   ++     HPVL++EAP N +A REK+T++MFE ++ PA ++   AVL+ +A+GR+TG++LDSG   +  +P+++GY L   I
Sbjct:    9 DEVGALVFDIGSYTVRAGYAGEDCPKVDFPTAIGVVLERDDGSTMMEIDGDKGKQGGPTYYIDTNALRVPRENMEAISPLKNGMVEDWDSFQAILDHTYKMHVKSEASLHPVLMSEAPWNTRAKREKLTELMFEHYSIPAFFLCKTAVLTAFANGRSTGLILDSGATHTTAIPVHDGYVLQQGI 192          
BLAST of EY679667 vs. ExPASy Swiss-Prot
Match: ACTL8_HUMAN (Actin-like protein 8 OS=Homo sapiens GN=ACTL8 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.081e-23
Identity = 62/173 (35.84%), Postives = 95/173 (54.91%), Query Frame = 3
Query:   39 LVCDNGTGMVKAGFAGDDAPRAVFPSIVGR--------PRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALP 533
            ++ D+G+G +KAG AG + P+ VFP+IV          P +    V +G    +            T  YPIE G + NW+ ++ +W     N  R   E  PV++TE PL   A+R+KM +I+FE  + P++ +A Q  +SLYASG  TG+V+DSG G++   P ++G  LP
Sbjct:    6 VIIDHGSGFLKAGTAGWNEPQMVFPNIVNYLPCKENPGPSYARRRVSLGIDICHPD----------TFSYPIERGRILNWEGVQYLWSFVLENHRR-EQEVPPVIITETPLREPADRKKMLEILFELLHVPSVLLADQLQMSLYASGLLTGVVVDSGYGLTRVQPFHQGRPLP 167          
BLAST of EY679667 vs. ExPASy Swiss-Prot
Match: ACT1_PSEMZ (Actin-1 (Fragment) OS=Pseudotsuga menziesii PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.691e-21
Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 3
Query:  222 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 356
            YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK
Sbjct:    1 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPK 45          
BLAST of EY679667 vs. ExPASy Swiss-Prot
Match: ARP5_SCHPO (Actin-like protein arp5 OS=Schizosaccharomyces pombe GN=arp5 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.766e-21
Identity = 55/165 (33.33%), Postives = 95/165 (57.58%), Query Frame = 3
Query:   36 PLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTL-KYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEG 521
            PLV DNG+  ++AG+ G+  P+ VF ++V R R       + +    VG++   + G  ++ + P E  ++SNWD ME++  +TF  +L +   EHP+ +TE   NP   R  MT+++FE +N P++   I  + S Y + +  ++GIVL+ G+  SH +P+  G
Sbjct:   26 PLVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNG 185          
BLAST of EY679667 vs. ExPASy Swiss-Prot
Match: ARP4_SCHPO (Actin-related protein 4 OS=Schizosaccharomyces pombe GN=arp4 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.188e-20
Identity = 61/201 (30.35%), Postives = 95/201 (47.26%), Query Frame = 3
Query:   24 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAIXXXXXXXXXXTDALMKILNQAWFFFSPQ 626
            +++  +V D G+   + GF+G+D P+ V PS  G       + G    + Y+    +S  G + +K  I +G V NWD    +W +    +L+  P EHP+L+TE   NP  NR K  + MFE+   PA Y+A Q   + +ASG+ T  ++D G   S    IY+G+ L               D L + L    F   P+
Sbjct:    9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNPG-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNFEVMPK 201          
BLAST of EY679667 vs. ExPASy Swiss-Prot
Match: ARP4_YARLI (Actin-related protein 4 OS=Yarrowia lipolytica GN=ARP4 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.013e-19
Identity = 53/176 (30.11%), Postives = 89/176 (50.57%), Query Frame = 3
Query:   24 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAY-------VGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYAL 530
            +++  LV D G+   + G+AG+D P+ V  +  G      V +     +         VGD A      + + +P+  GIV++WD ++ IW ++    L    + HP++LTE   N +AN+ K  +I FE+   PA Y+   AV S +A+G+   +VLD G  V+   P+ +G  L
Sbjct:   14 DEVATLVIDTGSSYTRVGYAGEDTPKLVVSTECGLMADEDVEMEDDTSNTTKKLNKYKVGDSANLPLPNMEVLHPLTDGIVADWDAVQNIWEYSLAR-LNADTKTHPLMLTEPCWNTQANKLKALEIAFESLEVPASYLVKDAVASAFAAGKGNALVLDVGSEVASVTPVIDGLVL 188          
BLAST of EY679667 vs. ExPASy Swiss-Prot
Match: CT134_MOUSE (Putative uncharacterized actin family protein C20orf134 homolog OS=Mus musculus PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.285e-18
Identity = 39/102 (38.24%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  222 YPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYA 527
            +PI+HG+V +WD +E +W       L+V PE+ PVL++++P  P   REK+ +++FE    PA ++A  A+L+L + G  +G+ +++G GV H  PIY G++
Sbjct:   37 HPIKHGVVVDWDALEGLWERLMVGGLQVHPEQWPVLVSDSPSAPPKGREKVAELLFEALTVPACHMANTALLALCSIGAFSGLAVEAGAGVCHATPIYAGHS 138          
BLAST of EY679667 vs. ExPASy Swiss-Prot
Match: ARP4A_ARATH (Actin-related protein 4A OS=Arabidopsis thaliana GN=ARP4A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.285e-18
Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 3
Query:   24 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVG---------------MGQKDAYVGDEAQS-KRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREK 371
            +++  +V D G+   KAG+AG+DAP+AVFPS+VG     G+ +                 G++  Y G +A + +R  + +  P + GIV++WD ++ +W H F N L + P EHP+LL E PLN +  REK
Sbjct:    5 DEVSAIVVDLGSHTCKAGYAGEDAPKAVFPSVVGAIDGNGMDIDDAANTTEDAKESDKEKGKRKLYTGSQALNFRRDQMEILSPTKDGIVTDWDMVDNVWDHAFRNCLMIDPTEHPMLLAEPPLNSQQQREK 136          
BLAST of EY679667 vs. ExPASy Swiss-Prot
Match: ARP7_ARATH (Actin-related protein 7 OS=Arabidopsis thaliana GN=ARP7 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.090e-18
Identity = 63/166 (37.95%), Postives = 86/166 (51.81%), Query Frame = 3
Query:   30 IQPLVCDNGTGMVKAGFA-GDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAP-EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEG 521
            ++ LV D G+  +KAG A  D +P  + PS + R      MV  G   A   D   +    +TL  PIE G++ +WD ME +  +  Y  L      E  +L T+    PKA RE++ Q+MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG
Sbjct:    1 MEALVVDAGSKFLKAGAAIPDQSPAMIIPSQMKR------MVDDGSSSA---DNPTTVFEDVTLD-PIERGLIRDWDAMEDLLRYVVYTGLGWEEGNEGNILFTDPLCTPKAIREQLVQLMFETFNVSGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEG 156          
BLAST of EY679667 vs. ExPASy Swiss-Prot
Match: ARP42_SCHPO (SWI/SNF and RSC complexes subunit arp42 OS=Schizosaccharomyces pombe GN=arp42 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.134e-17
Identity = 49/175 (28.00%), Postives = 92/175 (52.57%), Query Frame = 3
Query:   24 EDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGI--LTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAI 542
            E+I  LV D G+   + G+AG+++P  + PS      + GV   +  ++ YV DE Q    I  + +K    +GI+ +W+     W      +L+V P E+ +++TE   NP++ R+++ +  FE  + PA Y+  QAV   +A+ ++T +++D G   +   P+ +G  +   I
Sbjct:    8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGI 176          
The following BLAST results are available for this feature:
BLAST of EY679667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 466
Match NameE-valueIdentityDescription
ACL6A_MOUSE2.280e-2634.24Actin-like protein 6A OS=Mus musculus GN=Actl6a PE... [more]
ACTL8_HUMAN3.081e-2335.84Actin-like protein 8 OS=Homo sapiens GN=ACTL8 PE=2... [more]
ACT1_PSEMZ1.691e-21100.00Actin-1 (Fragment) OS=Pseudotsuga menziesii PE=1 S... [more]
ARP5_SCHPO3.766e-2133.33Actin-like protein arp5 OS=Schizosaccharomyces pom... [more]
ARP4_SCHPO3.188e-2030.35Actin-related protein 4 OS=Schizosaccharomyces pom... [more]
ARP4_YARLI6.013e-1930.11Actin-related protein 4 OS=Yarrowia lipolytica GN=... [more]
CT134_MOUSE2.285e-1838.24Putative uncharacterized actin family protein C20o... [more]
ARP4A_ARATH2.285e-1836.36Actin-related protein 4A OS=Arabidopsis thaliana G... [more]
ARP7_ARATH5.090e-1837.95Actin-related protein 7 OS=Arabidopsis thaliana GN... [more]
ARP42_SCHPO1.134e-1728.00SWI/SNF and RSC complexes subunit arp42 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-F12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679667 ID=EY679667; Name=EY679667; organism=Citrus sinensis; type=EST; length=937bp
GAAGTTAGAAAATGGCAGATACTGAGGATATTCAGCCTCTTGTTTGTGAC
AATGGGACTGGAATGGTGAAGGCTGGATTTGCCGGAGATGATGCTCCAAG
AGCTGTGTTCCCCAGCATTGTGGGTCGCCCTCGCCACACTGGAGTTATGG
TTGGTATGGGTCAGAAAGATGCCTATGTTGGTGATGAGGCTCAATCCAAA
AGAGGTATTTTGACTTTGAAATACCCAATCGAGCATGGCATTGTTAGCAA
CTGGGACGATATGGAGAAAATCTGGCATCACACATTTTATAATGAGCTTC
GTGTGGCTCCGGAAGAGCATCCGGTTCTTCTCACTGAGGCTCCCCTTAAT
CCAAAGGCCAATCGTGAGAAGATGACACAGATTATGTTTGAGACCTTTAA
CACCCCTGCTATGTATGTTGCTATCCAGGCTGTGCTTTCTCTCTATGCTA
GCGGTCGTACAACTGGTATTGTTCTGGACTCTGGAGATGGTGTCAGCCAC
ACAGTTCCCATCTATGAAGGTTATGCCCTTCCACACGCCATCCTCCGACT
GGACCTGGGCGGTCGTGACCTTACAGACGCCCTTATGAAAATTCTTAACC
AAGCGTGGTTTTTCTTTTCCCCACAAGTGGCTGGAACGGAAAATTGTTAG
GGACATGAAGGAGAAATTTACCCTAATTTGCTCTTGACTAAGGACAAGAG
CTAAAAAACACAAAAGACAACCTCCACCTGTGGAAAAAAACCTTTGAACT
CCCTGATGGCGCAGGTCCTCCTTATTTGGGGCCGAACGAATTCCGGGTCC
CACAAACACCCATTCCCCACACACCTGGGACGGGGGAACGGAAGCACGGC
GGGCCTCACATGGACCCAGTCAACCAACCACTATTTGAGTGCGGGAGAGA
TACACGAACAAACAAAGGCAGACCTACCCCGGGCGCC
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