EY679663

Overview
NameEY679663
Unique NameEY679663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 6.125e-28
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 245
            REH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:  108 REHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 6.125e-28
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 245
            REH S+PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISF+A KPP
Sbjct:  108 REHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.000e-28
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  110 RENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 8.000e-28
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 245
            REH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:  108 REHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.000e-28
Identity = 55/70 (78.57%), Postives = 61/70 (87.14%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  110 RENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 8.000e-28
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 245
            REH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:  108 REHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.000e-28
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 245
            REH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISF+A KPP
Sbjct:  108 REHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.045e-27
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            RE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:  109 RENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.045e-27
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            RE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:  109 RENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.045e-27
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            RE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:  109 RENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176          
The following BLAST results are available for this feature:
BLAST of EY679663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
RBS2_BRANA6.125e-2876.81Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS1_BRANA6.125e-2876.81Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3B_SOLLC8.000e-2878.57Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3B_ARATH8.000e-2876.81Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC8.000e-2878.57Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS2B_ARATH8.000e-2876.81Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS1B_ARATH8.000e-2876.81Ribulose bisphosphate carboxylase small chain 1B, ... [more]
RBS6_LEMGI1.045e-2779.41Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS5_LEMGI1.045e-2779.41Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS4_LEMGI1.045e-2779.41Ribulose bisphosphate carboxylase small chain SSU4... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-F08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679663 ID=EY679663; Name=EY679663; organism=Citrus sinensis; type=EST; length=1010bp
CGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGACCGTGAGCACCAC
AGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCC
CATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGG
TCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAAC
AAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGT
CTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTA
TTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTT
TGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTG
GTTTTCTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGA
AAAAAAGGAAAAAAAAGAGAAAAAGGGGGGGGGCCCCTCAAAAGAAAATC
AAAACTATAAAACCCGGGGGGTGGAAGAGAAAAACTTCTTTTAAAGGGGC
CCCCCAATTTCATCTCCGGGGGCTTTCTTTTTCAACCCCGGGGAGAGGGA
AAAACCCCGGGGGTTTCCCAATTATAACCCCTGTCCCCACACCCCCCCTT
TCCCCCCGGGGGGAAAAAAAAAAAAAGGCCCCCCCCTTTCCCCCTCCCCA
CAATTTTGGCCCCCCGTGAAGGGGAAAGGGGGCACCCCCCTGTGACCGCC
CGATTTAAACCGCCGGGGGGGGGGGGGGGGTGTTACCCACAACAGTGCGA
CCTCACATTTTGGCACGCCGCCCAAGAGCCCCCCCCCGTTTTTTTTTTTT
TCTTTCCTCTTTTTTTTTTTCCCCCGATTTTGGGGGCGGGTTTTTTCCCC
GCAAGAAACAAATAAAAAAAGGGGAGGGGGGGGCCCCCTTTTTGGGGGTG
TCCTCACAAT
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