EY679663

Overview
NameEY679663
Unique NameEY679663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.970e-27
Identity = 53/70 (75.71%), Postives = 60/70 (85.71%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            REH+SSPGYYDGRYWTMWKLPM+GCTD TQVL EV E +  YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  111 REHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 5.185e-27
Identity = 54/70 (77.14%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKEV E  K YP  F RIIGFDN RQVQCISFL  KP G
Sbjct:  108 REYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKPEG 177
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 5.185e-27
Identity = 51/70 (72.86%), Postives = 63/70 (90.00%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE+ SSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQC+SF+A+KP G
Sbjct:  103 RENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPTG 172
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 5.185e-27
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISF+A KP G
Sbjct:  110 RENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.772e-27
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  110 RENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.772e-27
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  110 RENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.772e-27
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  110 RENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.772e-27
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  110 RENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.772e-27
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  111 RENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.772e-27
Identity = 53/70 (75.71%), Postives = 61/70 (87.14%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISF+A KP G
Sbjct:  110 RENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 179
The following BLAST results are available for this feature:
BLAST of EY679663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
RBS0_SOLTU3.970e-2775.71Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS_ZANAE5.185e-2777.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_FLATR5.185e-2772.86Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2A_SOLLC5.185e-2777.14Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS_TOBAC6.772e-2775.71Ribulose bisphosphate carboxylase small chain, chl... [more]
RBSC_SOLTU6.772e-2775.71Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSB_SOLTU6.772e-2775.71Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBSA_SOLTU6.772e-2775.71Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS2_NICSY6.772e-2775.71Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS1_NICSY6.772e-2775.71Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-F08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679663 ID=EY679663; Name=EY679663; organism=Citrus sinensis; type=EST; length=1010bp
CGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGACCGTGAGCACCAC
AGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCC
CATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGG
TCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAAC
AAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGT
CTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTA
TTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTT
TGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTG
GTTTTCTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGA
AAAAAAGGAAAAAAAAGAGAAAAAGGGGGGGGGCCCCTCAAAAGAAAATC
AAAACTATAAAACCCGGGGGGTGGAAGAGAAAAACTTCTTTTAAAGGGGC
CCCCCAATTTCATCTCCGGGGGCTTTCTTTTTCAACCCCGGGGAGAGGGA
AAAACCCCGGGGGTTTCCCAATTATAACCCCTGTCCCCACACCCCCCCTT
TCCCCCCGGGGGGAAAAAAAAAAAAAGGCCCCCCCCTTTCCCCCTCCCCA
CAATTTTGGCCCCCCGTGAAGGGGAAAGGGGGCACCCCCCTGTGACCGCC
CGATTTAAACCGCCGGGGGGGGGGGGGGGGTGTTACCCACAACAGTGCGA
CCTCACATTTTGGCACGCCGCCCAAGAGCCCCCCCCCGTTTTTTTTTTTT
TCTTTCCTCTTTTTTTTTTTCCCCCGATTTTGGGGGCGGGTTTTTTCCCC
GCAAGAAACAAATAAAAAAAGGGGAGGGGGGGGCCCCCTTTTTGGGGGTG
TCCTCACAAT
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