EY679663

Overview
NameEY679663
Unique NameEY679663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 6.772e-27
Identity = 53/68 (77.94%), Postives = 61/68 (89.71%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            RE+++SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISF+A KP
Sbjct:  105 RENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.155e-26
Identity = 53/69 (76.81%), Postives = 59/69 (85.51%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 245
            RE++ SPGYYDGRYW MWKLPM+GCTDATQVL E+ E  K YP S +RIIGFDNKRQVQCISF+A KPP
Sbjct:  112 RENNRSPGYYDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.155e-26
Identity = 49/68 (72.06%), Postives = 62/68 (91.18%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            RE+H SPG+YDGRYWTMWKLPM+GCTD++QV++E+ E +KEYP +F+R+IGFDN RQVQCISF+A KP
Sbjct:  112 RENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.509e-26
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  103 RENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.509e-26
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  103 RENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.509e-26
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  108 RENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 177          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.509e-26
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  103 RENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.509e-26
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  108 RENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.509e-26
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            RE+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SF+A KP
Sbjct:  113 RENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRIIGFDNKRQVQCVSFIAYKP 180          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.970e-26
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            REH   PGYYDGRYWTMWKLPM+GCTDA QVLKE+ E+ K +P  + RIIGFDN RQVQCISFLA KPPG
Sbjct:  112 REHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISFLAYKPPG 181          
The following BLAST results are available for this feature:
BLAST of EY679663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
RBS1_LEMGI6.772e-2777.94Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS_FAGCR1.155e-2676.81Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CUCSA1.155e-2672.06Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS7_FLAPR1.509e-2672.86Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS5_FLAPR1.509e-2672.86Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_FLAPR1.509e-2672.86Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_FLAPR1.509e-2672.86Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FLAPR1.509e-2672.86Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_AMAHP1.509e-2676.47Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_MANES1.970e-2675.71Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-F08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679663 ID=EY679663; Name=EY679663; organism=Citrus sinensis; type=EST; length=1010bp
CGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGACCGTGAGCACCAC
AGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCC
CATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGG
TCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAAC
AAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGT
CTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTA
TTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTT
TGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTG
GTTTTCTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGA
AAAAAAGGAAAAAAAAGAGAAAAAGGGGGGGGGCCCCTCAAAAGAAAATC
AAAACTATAAAACCCGGGGGGTGGAAGAGAAAAACTTCTTTTAAAGGGGC
CCCCCAATTTCATCTCCGGGGGCTTTCTTTTTCAACCCCGGGGAGAGGGA
AAAACCCCGGGGGTTTCCCAATTATAACCCCTGTCCCCACACCCCCCCTT
TCCCCCCGGGGGGAAAAAAAAAAAAAGGCCCCCCCCTTTCCCCCTCCCCA
CAATTTTGGCCCCCCGTGAAGGGGAAAGGGGGCACCCCCCTGTGACCGCC
CGATTTAAACCGCCGGGGGGGGGGGGGGGGTGTTACCCACAACAGTGCGA
CCTCACATTTTGGCACGCCGCCCAAGAGCCCCCCCCCGTTTTTTTTTTTT
TCTTTCCTCTTTTTTTTTTTCCCCCGATTTTGGGGGCGGGTTTTTTCCCC
GCAAGAAACAAATAAAAAAAGGGGAGGGGGGGGCCCCCTTTTTGGGGGTG
TCCTCACAAT
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