EY679663

Overview
NameEY679663
Unique NameEY679663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.970e-26
Identity = 52/69 (75.36%), Postives = 60/69 (86.96%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPP 245
            REH+ S GYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISF+A KPP
Sbjct:  108 REHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.970e-26
Identity = 51/70 (72.86%), Postives = 62/70 (88.57%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP G
Sbjct:  103 RENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPGG 172          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.573e-26
Identity = 53/68 (77.94%), Postives = 58/68 (85.29%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            REH SSPGYYDGRYWTMWKLPM+GCTDATQV  EV E +K YP + +RIIGFDN RQVQCISF+A KP
Sbjct:  110 REHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 3.361e-26
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE+H SPGYYDGRYWTMWKLPM+GCTDA QVL+E+ E+ K YP  + RIIGFDN RQVQCISFLA KP G
Sbjct:  112 REYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.733e-26
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            RE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISF+A+KP
Sbjct:  103 RENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.487e-26
Identity = 49/70 (70.00%), Postives = 61/70 (87.14%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            RE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI F+A++P G
Sbjct:  108 RENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.487e-26
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            R+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF+  KP
Sbjct:  111 RDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.487e-26
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            R+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF+  KP
Sbjct:  111 RDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 9.779e-26
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKPPG 248
            REH+ SPGYYDGRYWTMWKLPM+GC   TQV+ EV EV+KEYP  + RIIGFDN RQVQ +SF+A+KPPG
Sbjct:   99 REHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPPG 168          
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.668e-25
Identity = 47/68 (69.12%), Postives = 59/68 (86.76%), Query Frame = 3
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            R+++ SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF+  +P
Sbjct:  111 RDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
The following BLAST results are available for this feature:
BLAST of EY679663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
RBS4_SOYBN1.970e-2675.36Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS1_FLAPR1.970e-2672.86Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_STELP2.573e-2677.94Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR3.361e-2675.71Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_FLAPR5.733e-2673.53Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS_HELAN7.487e-2670.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_FRIAG7.487e-2670.59Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FRIAG7.487e-2670.59Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_AEGTA9.779e-2672.86Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_FRIAG1.668e-2569.12Ribulose bisphosphate carboxylase small chain 1/4,... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-F08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679663 ID=EY679663; Name=EY679663; organism=Citrus sinensis; type=EST; length=1010bp
CGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGACCGTGAGCACCAC
AGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCC
CATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGG
TCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAAC
AAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGT
CTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTA
TTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTT
TGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTG
GTTTTCTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGA
AAAAAAGGAAAAAAAAGAGAAAAAGGGGGGGGGCCCCTCAAAAGAAAATC
AAAACTATAAAACCCGGGGGGTGGAAGAGAAAAACTTCTTTTAAAGGGGC
CCCCCAATTTCATCTCCGGGGGCTTTCTTTTTCAACCCCGGGGAGAGGGA
AAAACCCCGGGGGTTTCCCAATTATAACCCCTGTCCCCACACCCCCCCTT
TCCCCCCGGGGGGAAAAAAAAAAAAAGGCCCCCCCCTTTCCCCCTCCCCA
CAATTTTGGCCCCCCGTGAAGGGGAAAGGGGGCACCCCCCTGTGACCGCC
CGATTTAAACCGCCGGGGGGGGGGGGGGGGTGTTACCCACAACAGTGCGA
CCTCACATTTTGGCACGCCGCCCAAGAGCCCCCCCCCGTTTTTTTTTTTT
TCTTTCCTCTTTTTTTTTTTCCCCCGATTTTGGGGGCGGGTTTTTTCCCC
GCAAGAAACAAATAAAAAAAGGGGAGGGGGGGGCCCCCTTTTTGGGGGTG
TCCTCACAAT
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