EY679663

Overview
NameEY679663
Unique NameEY679663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.178e-25
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            REH+ SPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV   YP +FVRIIGFDN RQVQCISF+A  P
Sbjct:  110 REHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.178e-25
Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            REH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISF+A KP
Sbjct:  111 REHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.178e-25
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            REH+ SPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV   YP +FVRIIGFDN RQVQCISF+A  P
Sbjct:  110 REHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 2.178e-25
Identity = 49/68 (72.06%), Postives = 59/68 (86.76%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            REH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQCISF+A KP
Sbjct:  110 REHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 177
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.845e-25
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            REH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SF+A KP
Sbjct:  114 REHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.845e-25
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            REH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SF+A KP
Sbjct:  110 REHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.845e-25
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            REH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SF+A KP
Sbjct:  111 REHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.716e-25
Identity = 49/68 (72.06%), Postives = 60/68 (88.24%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            R+++SSPGYYDGRYWTMW+LP++G TDA QVLKEV E + EYP +F+RIIGFDN RQVQCISF+A+ P
Sbjct:  108 RQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTP 175
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.853e-25
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            RE++ SPGYYDGRYWTMWKLPM+GCTDA+QV  EV E +  YP + VRIIGFDNKRQVQCISF+A KP
Sbjct:  109 RENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176
[Close]
BLAST of EY679663 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.853e-25
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:   39 REHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFLAAKP 242
            R+++ SPGYYDGRYWTMWKLPM+GCT A QV+KE  E +KEYP +F+R+IGFDN RQVQC+SF+  KP
Sbjct:  111 RDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
The following BLAST results are available for this feature:
BLAST of EY679663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
RBS3_PEA2.178e-2576.47Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS3_MESCR2.178e-2572.06Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_PEA2.178e-2576.47Ribulose bisphosphate carboxylase small chain 3C, ... [more]
RBS1_MESCR2.178e-2572.06Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS6_MESCR2.845e-2570.59Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS5_MESCR2.845e-2570.59Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_MESCR2.845e-2570.59Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS_TRIRP3.716e-2572.06Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SILPR4.853e-2575.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_FRIAG4.853e-2569.12Ribulose bisphosphate carboxylase small chain 5, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-F08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679663 ID=EY679663; Name=EY679663; organism=Citrus sinensis; type=EST; length=1010bp
CGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGACCGTGAGCACCAC
AGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCC
CATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGG
TCCAGAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTTGACAAC
AAGCGTCAAGTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCACCAGGCGT
CTAGGTTCCCAATTAAATTTGTGTAACCACCCATGCAATATTGTTGATTA
TTATTATGTGTAACCCCCATAATGATCATTCGATCAATGGGGGTTCGGTT
TGCGTTTAATTTGTACTTAGGCTGCTGTTGCTGCTGCTCAAACTTTTTTG
GTTTTCTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGA
AAAAAAGGAAAAAAAAGAGAAAAAGGGGGGGGGCCCCTCAAAAGAAAATC
AAAACTATAAAACCCGGGGGGTGGAAGAGAAAAACTTCTTTTAAAGGGGC
CCCCCAATTTCATCTCCGGGGGCTTTCTTTTTCAACCCCGGGGAGAGGGA
AAAACCCCGGGGGTTTCCCAATTATAACCCCTGTCCCCACACCCCCCCTT
TCCCCCCGGGGGGAAAAAAAAAAAAAGGCCCCCCCCTTTCCCCCTCCCCA
CAATTTTGGCCCCCCGTGAAGGGGAAAGGGGGCACCCCCCTGTGACCGCC
CGATTTAAACCGCCGGGGGGGGGGGGGGGGTGTTACCCACAACAGTGCGA
CCTCACATTTTGGCACGCCGCCCAAGAGCCCCCCCCCGTTTTTTTTTTTT
TCTTTCCTCTTTTTTTTTTTCCCCCGATTTTGGGGGCGGGTTTTTTCCCC
GCAAGAAACAAATAAAAAAAGGGGAGGGGGGGGCCCCCTTTTTGGGGGTG
TCCTCACAAT
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