EY679651

Overview
NameEY679651
Unique NameEY679651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length989
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679651 vs. ExPASy Swiss-Prot
Match: CH10_STAEQ (10 kDa chaperonin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.043e-11
Identity = 32/93 (34.41%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  312 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 587
            +KPLG+RV+++ K  E+ T  GI L  +A+ K   G ++AVG+G+ +    ++   V  G  +++ +YAGTE++     +LI+ E+D++ I+E
Sbjct:    2 LKPLGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIIAVGQGRLLDNGTQVAPQVSEGDTIVFQQYAGTEVKRGDKTYLILNEEDILAIIE 94          
BLAST of EY679651 vs. ExPASy Swiss-Prot
Match: CH10_PSEU5 (10 kDa chaperonin OS=Pseudomonas stutzeri (strain A1501) GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.043e-11
Identity = 34/94 (36.17%), Postives = 62/94 (65.96%), Query Frame = 3
Query:  312 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDI-SVKPGTQVIYSKYAGTE-LEFNGANHLIVREDDVVGILE 587
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++   +VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNRGEVVAVGTGRVLDNGEVRAPAVKVGDKVVFGPYSGSNTVKVDGEDLLVMSENEILAVIE 96          
BLAST of EY679651 vs. ExPASy Swiss-Prot
Match: CH10_LEPCP (10 kDa chaperonin OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.043e-11
Identity = 36/92 (39.13%), Postives = 57/92 (61.96%), Query Frame = 3
Query:  312 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 584
            ++PL DRV+VK    E KT  GI +P  A  KP  GEV+AVG GK   K   + ++V  G +V++ KY+G  ++ +G   L++RE+D+  ++
Sbjct:    3 LRPLHDRVIVKRLEQETKTASGIVIPDNAAEKPDQGEVLAVGPGKRNDKGDFVALNVAVGDRVLFGKYSGQTVKVDGDELLVMREEDLFAVV 94          
BLAST of EY679651 vs. ExPASy Swiss-Prot
Match: CH10_COLMA (10 kDa chaperonin OS=Colwellia maris GN=groS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.043e-11
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 3
Query:  309 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELE-FNGANHLIVREDDVVGILE 587
            SI+PL DRV+VK K  E K++GGI L  +A  K    EV+AVG G+ +   ++  + VK G QVI+S+  G + E  +G   LI+ E D++ I+E
Sbjct:    2 SIRPLHDRVIVKRKDAESKSEGGIVLMGSATEKSTRAEVIAVGNGRILENGEVRPLDVKVGDQVIFSEGYGVKTEKIDGEEVLILSESDILAIVE 96          
BLAST of EY679651 vs. ExPASy Swiss-Prot
Match: CH10_WOLSU (10 kDa chaperonin OS=Wolinella succinogenes GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.602e-11
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  309 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 587
            + KPLG RVLV+    + KT  GI +P  A+ KP  G V A+ E   V K  L   +K G+QV+++KY+GT+++  G  +LI++ +D++G +E
Sbjct:    2 NFKPLGQRVLVERLEEDTKTASGIIIPDNAKEKPLMGTVKALSE--EVAKEGL---LKAGSQVVFAKYSGTDVKLEGKEYLILKVEDLLGTIE 89          
BLAST of EY679651 vs. ExPASy Swiss-Prot
Match: CH10_STRMU (10 kDa chaperonin OS=Streptococcus mutans GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.602e-11
Identity = 36/92 (39.13%), Postives = 60/92 (65.22%), Query Frame = 3
Query:  312 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEG-KTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 584
            +KPLGDRV+V++K  +E+T GG  L  A+Q K +  +VVAVGEG +T+    +  S+  G  ++   + GT ++ +G + LI+RE DV+ ++
Sbjct:    2 LKPLGDRVVVQLKEEKEQTVGGFVLAGASQEKTKKAQVVAVGEGVRTLTGELVASSLVQGDTILIENHVGTPVKDDGKDCLIIREADVLAVV 93          
BLAST of EY679651 vs. ExPASy Swiss-Prot
Match: CH10_STAHJ (10 kDa chaperonin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=groS PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.602e-11
Identity = 35/93 (37.63%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  312 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 587
            +KPLG+RV+++ K  E+ T  GI L  +A+ K   G VVAVG G+ +    K+   VK G +V++ +YAG+E++     +LI+  +D++ I+E
Sbjct:    2 LKPLGNRVIIERKEQEQTTKSGIVLTDSAKEKSNEGIVVAVGTGRVLDNGEKVAPEVKEGDRVVFQEYAGSEVKRGDKTYLILNVEDLLAIIE 94          
The following BLAST results are available for this feature:
BLAST of EY679651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 487
Match NameE-valueIdentityDescription
CH10_STAEQ5.043e-1134.4110 kDa chaperonin OS=Staphylococcus epidermidis (s... [more]
CH10_PSEU55.043e-1136.1710 kDa chaperonin OS=Pseudomonas stutzeri (strain ... [more]
CH10_LEPCP5.043e-1139.1310 kDa chaperonin OS=Leptothrix cholodnii (strain ... [more]
CH10_COLMA5.043e-1142.1110 kDa chaperonin OS=Colwellia maris GN=groS PE=3 ... [more]
CH10_WOLSU8.602e-1139.7810 kDa chaperonin OS=Wolinella succinogenes GN=gro... [more]
CH10_STRMU8.602e-1139.1310 kDa chaperonin OS=Streptococcus mutans GN=groS ... [more]
CH10_STAHJ8.602e-1137.6310 kDa chaperonin OS=Staphylococcus haemolyticus (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-E07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679651 ID=EY679651; Name=EY679651; organism=Citrus sinensis; type=EST; length=989bp
CCACGCGTCCGGGTTTTATCTTCTCGACTCTTCTTCAAATTTCAACTAGA
AACCTTATCAAACTACTCGCTCGCTTCTCGCTTATCATTTCCAATCAGAA
TCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCAGCTAA
CAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCGATGGT
CTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCA
ACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCA
AGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAATCAAG
ACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCAGCTCA
AACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAAGACAG
TTGGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGGTCATC
TATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAATCATCT
CATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGAAATCA
AGGATCTTAAGCCCCTTAATGACAGAGTTTTTCATCAAGGTTGCTGAGGC
TGAGGAGACAACTGCTGGAGGTTTGTTTGTTGACGGAGGCAAGCAGGGAG
AAACCTTCCATTGGGAACGGTCATTTGCTGGTTGAACCCGGTCTTCTAAA
TGAAGAAAGGAATAGGAAAACTCCATCCCTTTGCACCAGGGAAACACGGG
GAAGTTTTCAAAATATGGCGGGGAATGACTTCCAAGGGCATTGATGGGTA
CCAAATTACTTTGGCTTTAAAAAACCTTCGAAAAGGAAGGGGTTGTGGCT
CTCCTTAATTTGGTCTGGGGTTTTTATTTAAACCGAGGGGGTTTTAAATG
GATATAAAGGGGAATATAGAAATTTTTTAGGGGGTGGGG
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