EY679632

Overview
NameEY679632
Unique NameEY679632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length939
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY679632 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.733e-11
Identity = 34/92 (36.96%), Postives = 46/92 (50.00%), Query Frame = 1 
Query:  109 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH---NCMNKHARVWM---------CEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHER 348
            CD C+ A A V C  D A LC  CD+ IH      +KH R+ +         C++C++  A + C  D A LC  CD  IH AN  +  H+R
Sbjct:    5 CDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQR 96
[Close]
BLAST of EY679632 vs. ExPASy Swiss-Prot
Match: COL10_ARATH (Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.662e-11
Identity = 38/117 (32.48%), Postives = 58/117 (49.57%), Query Frame = 1 
Query:  109 CDTCKAAAAAVFCRVDSAFLCLNCDLRIH--NCMNK-HARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSA--NPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSE 444
            CD C    + V+CR D+A LCL+CD  +H  N ++K H+R  +CE C   PA+V C  +  +LC  CD   H    +     H+R  I  +     S   SS ++F +  + +   E
Sbjct:    5 CDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRCSDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSAELSSIWSFCMDLNISSAEE 121
The following BLAST results are available for this feature:
BLAST of EY679632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
STO_ARATH2.733e-1136.96Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]
COL10_ARATH4.662e-1132.48Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-C12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679632 ID=EY679632; Name=EY679632; organism=Citrus sinensis; type=EST; length=939bp
CAAAACTCAAAGAAAGAAAGAAAGAGGCTTTATTTAGTAATGCCCATGGG
AATTGAATTACATAGCGTGAAGGTTATTTCCGGCGGGTGGAGCGTGGCGG
TGAAGCCATGCGACACGTGCAAAGCGGCGGCGGCGGCTGTTTTCTGCAGA
GTTGACTCTGCTTTCCTATGCCTGAACTGCGATTTAAGAATCCACAATTG
CATGAACAAACACGCGCGTGTCTGGATGTGCGAGGTCTGCGAGCAGGCCC
CTGCGGCTGTCACGTGTAAGGCTGATGCGGCTGCCTTGTGTGTCACGTGC
GACAATGATATCCACTCTGCCAACCCTTTAGCCCGGCGCCATGAACGCCT
CCCTATTGAGCCGTTCTTCGACTCGGCTGACTCGATTGTCAAGTCGTCGG
CTTTTAACTTCCTGGTTCCGAGTGATCAAAATGGCGGCTCAGAGTTTACT
GGCGCCAGTGAACACGACGGCGTGGACTCTGCTTCCTGGCTGATTCCGAA
TTCGAAACCTGGAATTGAAAACGCGGGTGAAATGAAATCCGGGGATATGT
TTTTCATCGATCCGTTTATTGATTTGAATGATTTTGATTATCCCAATTCA
TTTCAAAATCATCATAGCGCTGGGATGGACAGTGTTGTGCCTGTTCAAAC
AACCTAAACCGGAACCATTTCCAGCTCAAGCTGCAGCTCCCATTTCCTTT
GATCAACAATGAAAATTTGCTTCGAAATCGATTTTCGGAAATCCCAACCT
CCCTTCCTTCCACTCCCAAAGCCCAAAGGTAATTTTCTAAACCCAAAAGC
CACATTTTTTCCCTCTTTTTTTTTTTTGTTTCCCGGCCTTTTAACCACCT
GGGCCGGGGGCGGCTTAGAAAAAAAAATCAAAAAAAAAGCGCACACAGGT
TTTCAAACCTAACCCCCATTTTTTTTTTTTCATTTTTAG
back to top