EY679627

Overview
NameEY679627
Unique NameEY679627
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1007
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679627 vs. ExPASy Swiss-Prot
Match: NEPI_SHISS (Purine ribonucleoside efflux pump nepI OS=Shigella sonnei (strain Ss046) GN=nepI PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 6.544e-14
Identity = 54/208 (25.96%), Postives = 91/208 (43.75%), Query Frame = -2
Query:   29 LGIPLGHLDERP*LGGRMPFLVTAVVGIPVLLAQMFLVPRLEPEKAIRISDLPALFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGVMGNVFAGFAANRSVRHTLLLVALMIGTSTALFPYFATGMSGAVMLIALWGFAFGAFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQIVD 652
            LG  LG L     +G R  F   AV+G+  +   +  +P L  E + +  +   L   P    G+IA+ +     FA +TY+ P + N +GF    +  +LL +G+A  +G   + F   RSV+  L    L++  S  +   + +    A  +  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG  +D
Sbjct:  163 LGSFLGEL-----IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFSVDGLTLVLLSFGIASFIGTSLSSFILKRSVKLALAGAPLILAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALD 365          
BLAST of EY679627 vs. ExPASy Swiss-Prot
Match: YDHP_ECO57 (Inner membrane transport protein ydhP OS=Escherichia coli O157:H7 GN=ydhP PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.547e-14
Identity = 63/237 (26.58%), Postives = 108/237 (45.57%), Query Frame = -2
Query:   32 SLVAPPCFPWRGRCEAPSIILMG*PWAPFLGIPLGH-LDERP*LGGRMPFLVTAVVGIPVLLAQMFLVPRLEPEKAIRISDLPALFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGVMGNVFAGFAANRSVRHTLLLVALMIGTSTALFPYFATGMSGAVMLIALWGFAFGAFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQIV 739
            S+VA    P   +  A + + MG   A   G+P    L E   +G RM FL TA +G+  +++  F +P+        +    A+ + PQ    L+  +L   A F  YTY++P  ++ +      + ++L+L GV   +GN   G  A+RSV  TL    L++       P+ A    GA + +A+WG A  A      + +  VA +       + +  F +  A+G+  GG ++
Sbjct:  115 SVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGET--IGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNKFGAAISMAVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVI 349          
BLAST of EY679627 vs. ExPASy Swiss-Prot
Match: SOTB_PSEE4 (Probable sugar efflux transporter OS=Pseudomonas entomophila (strain L48) GN=sotB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.547e-14
Identity = 66/235 (28.09%), Postives = 105/235 (44.68%), Query Frame = -2
Query:   44 VAPPCFPWRGRCEAPSIILMG*PWAPFLGIPLGHLDERP*LGGRMPFLVTAVVGIPVLLAQMFLVPRLEPEKAIRISDLPALFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGVMGN-VFAGFAANRSVRHTLLLVALMIGTSTALFPYFATGMSGAVMLIA----LWGFAFGAFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFG 733
            VAPP      + +A  ++  G   A  +GIPLG +     LG R+ FL  A V +  +L  M  +P L  + +  +  LP LF  P   +  + V L+  A F AY+Y+ PF  + +   G     LLLL+G AGV G+ +F+ ++        ++ +A +      L P     +SG   L A    +WG A  +F          +A    +  M LF  ++ + I  G+  G
Sbjct:  135 VAPP----GQQAKALGLLATGTTLAMVMGIPLGRVVGEA-LGWRITFLCIAGVALATMLCLMKSLPLLPSQNSGSLRSLPILFKRPALVITYLLVTLVITAQFTAYSYIEPFALHVAQIGGERTTLLLLLFGGAGVFGSLLFSRYSERFPHGFLVMAIAALAACLLLLLP-----LSGNFYLFAGLSMVWGMAILSFGLALQSKTLKLASDATDVAMALFSGIYNIGIGGGALLG 359          
BLAST of EY679627 vs. ExPASy Swiss-Prot
Match: NEPI_SHIFL (Purine ribonucleoside efflux pump nepI OS=Shigella flexneri GN=nepI PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 8.547e-14
Identity = 54/208 (25.96%), Postives = 91/208 (43.75%), Query Frame = -2
Query:   29 LGIPLGHLDERP*LGGRMPFLVTAVVGIPVLLAQMFLVPRLEPEKAIRISDLPALFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGVMGNVFAGFAANRSVRHTLLLVALMIGTSTALFPYFATGMSGAVMLIALWGFAFGAFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQIVD 652
            LG  LG L     +G R  F   AV+G+  +   +  +P L  E + +  +   L   P    G+IA+ +     FA +TY+ P + N +GF    +  +LL +G+A  +G   + F   RSV+  L    L++  S  +   + +    A  +  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG  +D
Sbjct:  163 LGSFLGEL-----IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFIGTSLSSFILKRSVKLALAGAPLILAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALD 365          
BLAST of EY679627 vs. ExPASy Swiss-Prot
Match: NEPI_SHIF8 (Purine ribonucleoside efflux pump nepI OS=Shigella flexneri serotype 5b (strain 8401) GN=nepI PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 8.547e-14
Identity = 54/208 (25.96%), Postives = 91/208 (43.75%), Query Frame = -2
Query:   29 LGIPLGHLDERP*LGGRMPFLVTAVVGIPVLLAQMFLVPRLEPEKAIRISDLPALFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGVMGNVFAGFAANRSVRHTLLLVALMIGTSTALFPYFATGMSGAVMLIALWGFAFGAFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQIVD 652
            LG  LG L     +G R  F   AV+G+  +   +  +P L  E + +  +   L   P    G+IA+ +     FA +TY+ P + N +GF    +  +LL +G+A  +G   + F   RSV+  L    L++  S  +   + +    A  +  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG  +D
Sbjct:  163 LGSFLGEL-----IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFIGTSLSSFILKRSVKLALAGAPLILAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALD 365          
BLAST of EY679627 vs. ExPASy Swiss-Prot
Match: NEPI_SHIBS (Purine ribonucleoside efflux pump nepI OS=Shigella boydii serotype 4 (strain Sb227) GN=nepI PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 8.547e-14
Identity = 54/208 (25.96%), Postives = 91/208 (43.75%), Query Frame = -2
Query:   29 LGIPLGHLDERP*LGGRMPFLVTAVVGIPVLLAQMFLVPRLEPEKAIRISDLPALFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGVMGNVFAGFAANRSVRHTLLLVALMIGTSTALFPYFATGMSGAVMLIALWGFAFGAFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQIVD 652
            LG  LG L     +G R  F   AV+G+  +   +  +P L  E + +  +   L   P    G+IA+ +     FA +TY+ P + N +GF    +  +LL +G+A  +G   + F   RSV+  L    L++  S  +   + +    A  +  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG  +D
Sbjct:  163 LGSFLGEL-----IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFIGTSLSSFILKRSVKLALAGAPLILAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALD 365          
BLAST of EY679627 vs. ExPASy Swiss-Prot
Match: NEPI_ECOLI (Purine ribonucleoside efflux pump nepI OS=Escherichia coli (strain K12) GN=nepI PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 8.547e-14
Identity = 54/208 (25.96%), Postives = 91/208 (43.75%), Query Frame = -2
Query:   29 LGIPLGHLDERP*LGGRMPFLVTAVVGIPVLLAQMFLVPRLEPEKAIRISDLPALFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGVMGNVFAGFAANRSVRHTLLLVALMIGTSTALFPYFATGMSGAVMLIALWGFAFGAFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQIVD 652
            LG  LG L     +G R  F   AV+G+  +   +  +P L  E + +  +   L   P    G+IA+ +     FA +TY+ P + N +GF    +  +LL +G+A  +G   + F   RSV+  L    L++  S  +   + +    A  +  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG  +D
Sbjct:  163 LGSFLGEL-----IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFIGTSLSSFILKRSVKLALAGAPLILAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALD 365          
BLAST of EY679627 vs. ExPASy Swiss-Prot
Match: NEPI_ECOBW (Purine ribonucleoside efflux pump nepI OS=Escherichia coli (strain K12 / BW2952) GN=nepI PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.547e-14
Identity = 54/208 (25.96%), Postives = 91/208 (43.75%), Query Frame = -2
Query:   29 LGIPLGHLDERP*LGGRMPFLVTAVVGIPVLLAQMFLVPRLEPEKAIRISDLPALFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGVMGNVFAGFAANRSVRHTLLLVALMIGTSTALFPYFATGMSGAVMLIALWGFAFGAFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQIVD 652
            LG  LG L     +G R  F   AV+G+  +   +  +P L  E + +  +   L   P    G+IA+ +     FA +TY+ P + N +GF    +  +LL +G+A  +G   + F   RSV+  L    L++  S  +   + +    A  +  +WG  F   P   S W+        E+   + VA+ Q+    G+  GG  +D
Sbjct:  163 LGSFLGEL-----IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFIGTSLSSFILKRSVKLALAGAPLILAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALD 365          
BLAST of EY679627 vs. ExPASy Swiss-Prot
Match: SOTB_ERWCT (Probable sugar efflux transporter OS=Erwinia carotovora subsp. atroseptica GN=sotB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.116e-13
Identity = 55/225 (24.44%), Postives = 106/225 (47.11%), Query Frame = -2
Query:   32 RCEAPSIILMG*PWAPFLGIPLGHLDERP*LGGRMPFLVTAVVGIPVLLAQMFLVPRLEPEKAIRISDLPALFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGVMGN-VFAGFAANRSVRHTLLLVALMIGTSTALFPYFATGMSGAVMLIALWGFAFGAFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQIV 703
            + +A S++  G   A  LG+PLG +  +  LG R+ F++  ++   +++  M L+P L    +  +  LP L   P         ++I  AHF AY+Y+ PF    +         LLL++G AG++G+ +F+ +++       ++  A +      L P   +G S + + I +WG A  A      + +  +A    +  M L+  ++ + I  G+  G Q++
Sbjct:  133 KAQALSLLATGTALALVLGLPLGRVVGQY-LGWRVTFVLIGLIAAVIMVGLMKLLPVLPSSNSGSLKSLPLLLKRPALLCVYGLTVMIVTAHFTAYSYIEPFILKVALLSENFTTILLLIFGGAGIIGSMLFSRYSSKYPAGFLIVSFAFLAVCLLLLLPLSFSGWSLSTLCI-VWGIAIMALSLGMQVKVLTLASDATDVAMALYSGIYNIGIGGGALLGNQVI 355          
BLAST of EY679627 vs. ExPASy Swiss-Prot
Match: YDHP_ECOLI (Inner membrane transport protein ydhP OS=Escherichia coli (strain K12) GN=ydhP PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.248e-13
Identity = 62/237 (26.16%), Postives = 107/237 (45.15%), Query Frame = -2
Query:   32 SLVAPPCFPWRGRCEAPSIILMG*PWAPFLGIPLGH-LDERP*LGGRMPFLVTAVVGIPVLLAQMFLVPRLEPEKAIRISDLPALFINPQARVGLIAVLLIGLAHFAAYTYVAPFFKNSSGFDGPTIGSLLLLYGVAGVMGNVFAGFAANRSVRHTLLLVALMIGTSTALFPYFATGMSGAVMLIALWGFAFGAFPACASIWMFVVAPKDVERGMPLFVALFQVIIAVGSFFGGQIV 739
            S+VA    P   +  A + + MG   A   G+P    L E   +G RM FL TA +G+  +++  F +P+        +    A+ + PQ    L+  +L   A F  YTY++P  ++ +      + ++L+L GV   +GN   G  A+RSV  TL    L++       P+ A    GA + + +WG A  A      + +  VA +       + +  F +  A+G+  GG ++
Sbjct:  115 SVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGET--IGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVI 349          
The following BLAST results are available for this feature:
BLAST of EY679627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
NEPI_SHISS6.544e-1425.96Purine ribonucleoside efflux pump nepI OS=Shigella... [more]
YDHP_ECO578.547e-1426.58Inner membrane transport protein ydhP OS=Escherich... [more]
SOTB_PSEE48.547e-1428.09Probable sugar efflux transporter OS=Pseudomonas e... [more]
NEPI_SHIFL8.547e-1425.96Purine ribonucleoside efflux pump nepI OS=Shigella... [more]
NEPI_SHIF88.547e-1425.96Purine ribonucleoside efflux pump nepI OS=Shigella... [more]
NEPI_SHIBS8.547e-1425.96Purine ribonucleoside efflux pump nepI OS=Shigella... [more]
NEPI_ECOLI8.547e-1425.96Purine ribonucleoside efflux pump nepI OS=Escheric... [more]
NEPI_ECOBW8.547e-1425.96Purine ribonucleoside efflux pump nepI OS=Escheric... [more]
SOTB_ERWCT1.116e-1324.44Probable sugar efflux transporter OS=Erwinia carot... [more]
YDHP_ECOLI3.248e-1326.16Inner membrane transport protein ydhP OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-002-C07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679627 ID=EY679627; Name=EY679627; organism=Citrus sinensis; type=EST; length=1007bp
CCTGCGGGTCCNGGTCCCGGAATTCCGGGTCGACAATCTGCCCGCCAAAG
AACGAGCCCACGGCAATGATCACCTGGAACAACGCGACGAACAGCGGCAT
GCCACGTTCCACATCCTTGGGCGCCACCACAAACATCCAGATACTCGCGC
AGGCCGGGAAGGCGCCGAAGGCGAAGCCCCACAGTGCGATCAGCATCACG
GCGCCGCTCATGCCGGTGGCGAAGTAGGGGAACAGGGCAGTGCTGGTGCC
GATCATCAGGGCCACCAGCAGCAGGGTGTGGCGCACGCTGCGGTTGGCGG
CGAAGCCGGCGAAGACGTTGCCCATTACGCCGGCCACGCCGTAGAGCAGC
AGCAGCGAGCCAATGGTCGGGCCGTCGAAGCCGGAGCTGTTTTTGAAGAA
CGGGGCGACGTAGGTGTAGGCGGCAAAGTGCGCGAGGCCGATCAGCAGCA
CGGCGATCAAGCCGACCCGGGCTTGTGGGTTGATGAACAGGGCCGGCAGG
TCGCTGATGCGGATGGCTTTTTCCGGTTCGAGGCGCGGCACCAGGAACAT
CTGCGCCAGCAGTACCGGGATGCCCACCACCGCGGTGACAAGGAAAGGCA
TGCGCCCGCCCAATCAGGGCCGCTCATCCAGGTGGCCAAGGGGTATGCCG
AGGAAGGGGGCCCAGGGTCAGCCCATCAGGATGATTGAGGGGGCTTCACA
ACGCCCACGCCATGGGAAGCAGGGGGGCGCGACTAAAGAAACCCAGGGTA
AGGTCAACTTGGAGGAAAAAACTTAAACTTTTACAGTGGCCACCAAATTA
AAGTCAGGGGCCCCATTCTTCCCAGCTGCGGCGGGGGAAAACGCAGGCAG
TCCCCAAATGTATATGCCTTGGTGCGAAAATTCCCCTGTTTCTGCCAGCG
GGGGGATGAACGAAGGGAGGGCCGCCCCCTAGCGTGCGCCTGATAGGAAC
AAAGAGTGCACCACACACAAGAAAAAAAAAAAGGAAGTAAAACGCACGAA
GAAAGAA
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