EY679347

Overview
NameEY679347
Unique NameEY679347
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length974
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS7_THEVO (30S ribosomal protein S7P OS=Thermoplasma volcanium GN=rps7p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.149e-26
Identity = 64/157 (40.76%), Postives = 99/157 (63.06%), Query Frame = 1
Query:   16 YIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            YI V++A +     HT GR+S     K    +VERL N LM   +  GKK  A +I K A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  I TGA  ++F++ ++I  CLADE++ AAK  ++S    +K
Sbjct:   21 YINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRTEKWTGKKYSAYKITKDAFDIIADKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMLAAKNDASSFAISKK 173          
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS7_NATPD (30S ribosomal protein S7P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps7p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.419e-26
Identity = 60/135 (44.44%), Postives = 86/135 (63.70%), Query Frame = 1
Query:   46 TYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAA 450
            T + HT GR+S K+F+K++  IVERL N LM    N GKK  A +IV+ A +I+   TD+NP+QV+V AV N+GPRE+  R+   G+   +AVD++P RRV+ A+  I  G    +F+    + E LA +LI AA
Sbjct:   46 TPIAHTMGRHSEKQFKKSEISIVERLINRLMQTDENTGKKQQATKIVREAFDIVAERTDENPVQVLVTAVENAGPREETVRLKYGGISVPKAVDVAPQRRVDLALKFIAEGTYNDSFKTTTPVEEALAHQLIGAA 180          
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS7_THEAC (30S ribosomal protein S7P OS=Thermoplasma acidophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.059e-25
Identity = 62/157 (39.49%), Postives = 97/157 (61.78%), Query Frame = 1
Query:   16 YIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            YI V++A +     HT GR+S     K    +VERL N LM   +  GKK  A +I + A +II   T QNP+Q++++A+ N+GPRE+ TR+   G+   ++VD+SP RRV++A+  I TGA  ++F++ ++I  CLADE++ AA+    S    +K
Sbjct:   21 YINVKSALNL----HTGGRFSSYYAGKINMNVVERLINKLMRSEKWTGKKYSAYKITEEAFQIIAEKTKQNPLQILINAIENAGPREEVTRLKYGGIAVPKSVDVSPSRRVDEALRNIATGATNASFKSKKSIVNCLADEIMAAARNDPTSFAISKK 173          
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS7_PICTO (30S ribosomal protein S7P OS=Picrophilus torridus GN=rps7p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.229e-25
Identity = 59/143 (41.26%), Postives = 87/143 (60.84%), Query Frame = 1
Query:   58 HTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            HT GRYS     K     +ERL N LM   +  GKK  A R++K A EI+   T QNP+QV+++A+ NS PRE+ TR+   G+   ++VD+SP RR+++A+  I  GA   +F++   I ECLA+E+I A++   NS    +K
Sbjct:   34 HTGGRYSNYSAGKRNVNTIERLLNKLMRTEKWTGKKYSAYRVLKEAFEIVEQKTKQNPVQVLINAIENSAPREEVTRLKYGGIAVPKSVDVSPSRRLDEALRNICIGATSKSFKSKVPIEECLANEIILASRNDGNSYAVSKK 176          

HSP 2 Score: 24.2534 bits (51), Expect = 2.229e-25
Identity = 9/18 (50.00%), Postives = 15/18 (83.33%), Query Frame = 2
Query:  467 AYAIQKKDEIDRMAKANR 520
            +YA+ KK+EI+R+A + R
Sbjct:  170 SYAVSKKEEIERVAASAR 187          
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS7_HALMO (30S ribosomal protein S7P OS=Halococcus morrhuae GN=rps7p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.991e-25
Identity = 59/135 (43.70%), Postives = 88/135 (65.19%), Query Frame = 1
Query:   46 TYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAA 450
            T V HT GR++ K+F+K++  IVERL N LM    N GKK  A RIV++A ++I   T+++P+QV+V AV N+ PRE+  R+   G+   QAVD++P RRV+QA+  I  G   ++F++     E LA++L  AA
Sbjct:   46 TPVEHTMGRHAGKQFQKSEISIVERLINRLMQTDENTGKKQQATRIVRNAFDLIAERTEESPVQVLVSAVENAAPREETVRLKYGGISVPQAVDVAPQRRVDQALKFIAEGTHSASFKSPTDAHEALAEQLTGAA 180          
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS7_METB6 (30S ribosomal protein S7P OS=Methanoregula boonei (strain 6A8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.022e-24
Identity = 59/137 (43.07%), Postives = 90/137 (65.69%), Query Frame = 1
Query:   52 VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSS 462
            +PH+ G++S + F KA   IVERL N LM    N GKK +A+ IV+ A E+I+  T +NPI+V+V+A+ N+GPRE+  R+   G+   ++VD +PLRRV+ AI  I     +S+ ++ +  +  LADELI A+KG +
Sbjct:   49 IPHSCGKFSRQEFNKANMMIVERLINRLMQTENNTGKKQLAIGIVRDAFELINKKTKRNPIEVLVEAIGNTGPREETVRLKYGGINVPKSVDTAPLRRVDSAIGFIAEAVWKSSRKSKKPASAILADELIAASKGDA 185          
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS7_PYRKO (30S ribosomal protein S7P OS=Pyrococcus kodakaraensis GN=rps7p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.335e-24
Identity = 71/177 (40.11%), Postives = 94/177 (53.11%), Query Frame = 1
Query:    4 SLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            SL  YI + A      +PH+ GRY+ K F KA   IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV+V A+ NS PRED T I   G+    +VD+SPLRR++ A+  I  GA    +RN  T A+ LA+E+I AA     S  + +K
Sbjct:   32 SLKPYINLDAR----ILPHSHGRYAKKPFGKANVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLVKAIENSAPREDTTTIAFGGIRYHMSVDVSPLRRLDIALKNIALGASIKCYRNKTTYAQALAEEIIAAANKDPKSFAYSKK 204          
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS7_THEON (30S ribosomal protein S7P OS=Thermococcus onnurineus (strain NA1) GN=rps7p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.743e-24
Identity = 70/177 (39.55%), Postives = 95/177 (53.67%), Query Frame = 1
Query:    4 SLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                GKK+ A  +VK A  II   T QNPIQV + A+ NS PRED T I   G+    AVD+SPLRR++ A+  I  GA    +RN  + A+ LA+E+I AA     S  + +K
Sbjct:   32 SLRPYINLEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASSHKVGGHFMRREHRSLMGKKMKAYEVVKEAFMIIERRTKQNPIQVFIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDIALKNIALGASAKCYRNKTSYAQALAEEIIAAANKDPKSFAYSKK 204          
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS7_THEGJ (30S ribosomal protein S7P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps7p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.277e-24
Identity = 70/177 (39.55%), Postives = 95/177 (53.67%), Query Frame = 1
Query:    4 SLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNN----------------GKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSSNSLCHPEK 486
            SL  YI ++       +PH+ GR++ K F KAQ  IVERL N +M  G ++                 KK+ A  +VK A  II   T QNPIQV++ A+ NS PRED T I   G+    AVD+SPLRR++ A+  I  GA    +RN  T A+ LA+E+I AA     S  + +K
Sbjct:   32 SLRPYIALEPR----ILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLIRAIENSAPREDTTTIAFGGIRYHMAVDVSPLRRLDVALKNIALGASIKCYRNKTTYAQALAEEIIAAANRDPKSFAYSKK 204          
BLAST of EY679347 vs. ExPASy Swiss-Prot
Match: RS7_METLZ (30S ribosomal protein S7P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps7p PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.973e-24
Identity = 59/140 (42.14%), Postives = 88/140 (62.86%), Query Frame = 1
Query:   43 ATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLITTGARESAFRNIRTIAECLADELINAAKGSS 462
            +T VP + GR + ++F K++  IVERL N LM    N GKK+M  ++V  A ++I+  T QNP+QV+VDAV N+GPRE+  R+   G+   ++VD +P+RRVN A+  I     + + +  +     LADELI AAKG +
Sbjct:   36 STEVPSSCGRLTQQQFTKSEMAIVERLINRLMQQEYNTGKKMMCTKMVMDAFDVINKKTKQNPLQVLVDAVANAGPREETVRLKYGGINVPKSVDSAPIRRVNTALRYIALATWKGSHKTKKPAYLVLADELIMAAKGDA 175          
The following BLAST results are available for this feature:
BLAST of EY679347 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS7_THEVO4.149e-2640.7630S ribosomal protein S7P OS=Thermoplasma volcaniu... [more]
RS7_NATPD5.419e-2644.4430S ribosomal protein S7P OS=Natronomonas pharaoni... [more]
RS7_THEAC2.059e-2539.4930S ribosomal protein S7P OS=Thermoplasma acidophi... [more]
RS7_PICTO2.229e-2541.2630S ribosomal protein S7P OS=Picrophilus torridus ... [more]
RS7_HALMO5.991e-2543.7030S ribosomal protein S7P OS=Halococcus morrhuae G... [more]
RS7_METB61.022e-2443.0730S ribosomal protein S7P OS=Methanoregula boonei ... [more]
RS7_PYRKO1.335e-2440.1130S ribosomal protein S7P OS=Pyrococcus kodakaraen... [more]
RS7_THEON1.743e-2439.5530S ribosomal protein S7P OS=Thermococcus onnurine... [more]
RS7_THEGJ2.277e-2439.5530S ribosomal protein S7P OS=Thermococcus gammatol... [more]
RS7_METLZ2.973e-2442.1430S ribosomal protein S7P OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-059-B10-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679347 ID=EY679347; Name=EY679347; organism=Citrus sinensis; type=EST; length=974bp
ATCTCGTTGAGTGATTATATTGGCGTGCAAGCGGCCAAGCACGCTACTTA
TGTGCCTCACACTGCTGGGAGGTACTCAGTTAAGCGTTTCCGGAAGGCCC
AATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCACGGTCGT
AACAACGGCAAGAAATTGATGGCCGTCAGGATTGTTAAGCATGCCATGGA
GATCATTCACCTTTTGACCGACCAGAACCCAATTCAAGTCATTGTTGATG
CTGTCATCAACAGTGGTCCAAGGGAAGATGCTACCCGTATTGGATCTGCT
GGTGTTGTTAGGCGTCAGGCTGTGGATATTTCCCCATTGCGCCGTGTGAA
TCAAGCGATCTATCTAATCACCACTGGTGCTCGTGAATCTGCTTTTCGTA
ACATCAGGACTATTGCCGAATGCTTGGCCGATGAACTCATTAATGCTGCC
AAGGGTTCATCTAACAGCTTATGCCATCCAGAAAAAGGATGAGATTGATA
GAATGGCTAAAGCCAATCGCTGAAGTTCTGAAAATTGGATAATCCTATGC
ATTAAAGTTGTACTTTTTTTCATAAAAAAACTTTTTGGAACAATGGTTTA
TGTGCCTCTTTTGCAATTTTACCAATGGTTTGTTTCAAGGTTTTGAAGAG
TATGAAATTTGAGGATGGCTATTACTGGCTTTCCTGGGTATCCATTTTGC
CAAGGGGGGGGGAATGTTACAAAAGGAATTCTGGCCAAATTAAAATCAAA
TCTAGAAATTAAATGGGTTATTATAATTCCCGCCTGGTTGTGTATTTTAA
AAAATATAAAATATAAGGGGGGGGCCTCCTTCCTTGATGGGAACCCCGTT
TTACTTTATGGTCGTTGCTTGGTAAAACTTTTAAAAAACCTCATTCTTTA
ATAATTTCTACTAAATTATTACTAATTATATGGTGGACTGTCTTTTTCTT
ATTATGGTCCACAAATGCAAAGCG
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