EY664158

Overview
NameEY664158
Unique NameEY664158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.376e-23
Identity = 57/167 (34.13%), Postives = 93/167 (55.69%), Query Frame = 3
Query:   42 FASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN*N 542
            F  P GDHLTL+NV+              ++ +      +WC +NFI  RS++ A+D+  Q+   +E++   + S  +D    R+C+A+ FF N+A  +  G +R     Q VQIHPSS LF++ P+ +V++EL+ T  +++R I  I   WL E+AP  Y  ++ N
Sbjct:  938 FFHPQGDHLTLMNVF--------------NQWRESGYAVQWCFENFIQHRSMKRAQDVRDQLELLLERVEIPLVSNVDDTDSIRKCIASGFFYNSAKLEKSGLFRTTKHNQSVQIHPSSCLFQSPPKWVVYHELVLTTKEFMRQIVEIQSSWLHEIAPHIYKEKDVN 1090          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.347e-23
Identity = 56/179 (31.28%), Postives = 97/179 (54.19%), Query Frame = 3
Query:    3 RGELEEARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRA--KPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQ 533
            +G  EE+      FA P+ DHLT +NVY               + K       WC D+FI+++++R  R++ +Q++  + Q    ++SCG D  + R+C+ A++F  AA  +  G Y  +  G    +HP+S LF     P+ IV++EL+ T  +Y++ +T +D  WL EL P +Y+++
Sbjct:  988 KGREEESDQIREKFAVPESDHLTYLNVYL--------------QWKNNNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVK 1152          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.828e-23
Identity = 55/179 (30.73%), Postives = 97/179 (54.19%), Query Frame = 3
Query:    3 RGELEEARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRA--KPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQ 533
            +G  EE+      FA P+ DHL+ +NVY               + K       WC D+FI+++++R  R++ +Q++  + Q    ++SCG D  + R+C+ A++F  AA  +  G Y  +  G    +HP+S LF     P+ IV++EL+ T  +Y++ +T +D  WL EL P +Y+++
Sbjct:  988 KGREEESDQIREKFAVPESDHLSYLNVYL--------------QWKNNNYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQAAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVK 1152          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: PRP22_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 OS=Schizosaccharomyces pombe GN=prp22 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.165e-22
Identity = 55/181 (30.39%), Postives = 94/181 (51.93%), Query Frame = 3
Query:    3 RGELEEARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQP-EGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN*N 542
            R + +EA      FA+P+ DHLTL+NVY              +  K  +    WC +++I +R +R A D+  Q+   +++    + SCG    +  R L + +F N A +   EG Y+ +     V +HPS VLF    E ++++ELIQT+ +Y+  ++ ++  WL E+AP ++   N N
Sbjct:  968 REKQQEADRQRAQFANPESDHLTLLNVY--------------TTWKMNRCSDNWCYEHYIQARGMRRAEDVRKQLIRLMDRYRHPVVSCGRKRELILRALCSGYFTNVAKRDSHEGCYKTIVENAPVYMHPSGVLFGKAAEWVIYHELIQTSKEYMHTVSTVNPKWLVEVAPTFFKFANAN 1134          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX15_PONAB (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Pongo abelii GN=DHX15 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.521e-22
Identity = 66/176 (37.50%), Postives = 90/176 (51.14%), Query Frame = 3
Query:   21 ARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCG----EDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN 536
            A  A   FA  DGDHLTL+NVY A             K+  E +  +WC DNFIN RSL  A ++  Q+   +++      S      +  I  R+ L   +F+  A  +  G Y  +   QVVQ+HPS+VL   KPE +++NE + T   YIR  T I   WL ++APQYY M N
Sbjct:  610 ADEAKMRFAHIDGDHLTLLNVYHAF------------KQNHESV--QWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDH-KPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSN 770          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX15_MOUSE (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Mus musculus GN=Dhx15 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.521e-22
Identity = 66/176 (37.50%), Postives = 90/176 (51.14%), Query Frame = 3
Query:   21 ARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCG----EDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN 536
            A  A   FA  DGDHLTL+NVY A             K+  E +  +WC DNFIN RSL  A ++  Q+   +++      S      +  I  R+ L   +F+  A  +  G Y  +   QVVQ+HPS+VL   KPE +++NE + T   YIR  T I   WL ++APQYY M N
Sbjct:  610 ADEAKMRFAHIDGDHLTLLNVYHAF------------KQNHESV--QWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDH-KPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSN 770          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX15_HUMAN (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.521e-22
Identity = 66/176 (37.50%), Postives = 90/176 (51.14%), Query Frame = 3
Query:   21 ARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCG----EDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN 536
            A  A   FA  DGDHLTL+NVY A             K+  E +  +WC DNFIN RSL  A ++  Q+   +++      S      +  I  R+ L   +F+  A  +  G Y  +   QVVQ+HPS+VL   KPE +++NE + T   YIR  T I   WL ++APQYY M N
Sbjct:  610 ADEAKMRFAHIDGDHLTLLNVYHAF------------KQNHESV--QWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDH-KPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSN 770          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: MOG1_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.389e-22
Identity = 54/179 (30.17%), Postives = 99/179 (55.31%), Query Frame = 3
Query:    3 RGELEEARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRA--KPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQ 533
            +G  EEA      F  P+ DHLT +NVY               + +T K   KWC DN+++ ++L+  R++ +Q++  ++ +   + S G +  + R+C+ +++F NAA  +  G Y  +  G    +HP+S LF     P+ +V++ELI T  +Y++ +T +D +WL EL P +Y+++
Sbjct:  898 KGREEEADAKKEKFQVPESDHLTFLNVY--------------IQWRTHKYSAKWCADNYLHVKALKKVREVRAQLKEIMQDLKLPLISNGSEWDIVRKCICSAYFHNAARLKGIGEYVNVRTGIPCFLHPTSALFGMGFMPDYVVYHELIMTAKEYMQCVTAVDAIWLAELGPMFYSIK 1062          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX35_HUMAN (Probable ATP-dependent RNA helicase DHX35 OS=Homo sapiens GN=DHX35 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.389e-22
Identity = 56/162 (34.57%), Postives = 89/162 (54.94%), Query Frame = 3
Query:   42 FASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAK-PECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYY 524
            FA  +GDHLT++N+Y A   F++  K             KWC+++F+N + L  A  +  Q++  + +      S   D  +  RC+ + FF NAA     G YR +     + IHP+SVL+  K P  +++NE+IQT+  Y+R++T I+  WL ELAP +Y
Sbjct:  538 FAVEEGDHLTMLNIYEA---FIKHNKDS-----------KWCQEHFLNYKGLVRAATVREQLKKLLVKFQVPRKSSEGDPDLVLRCIVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYAEKPPRWVIYNEVIQTSKYYMRDVTAIESAWLLELAPHFY 685          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: PRP43_YEAST (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae GN=PRP43 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.288e-21
Identity = 62/179 (34.64%), Postives = 95/179 (53.07%), Query Frame = 3
Query:   15 EEARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMF----RRCLAASFFLNAALKQPEGT-YRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN 536
            + A +A   FA PDGDH+TL+NVY A            S E  E  + KWC+D+++N RSL  A +I SQ+   + +    +++   +   +    R+ LA+ FF+  A K+     Y  +   Q V IHPS+VL     E +++NE + T+  YIR +T +   WL E+AP YY + N
Sbjct:  563 KRADDAKNIFAHPDGDHITLLNVYHAFK----------SDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLGH-DAEWVIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAYYDLSN 730          
The following BLAST results are available for this feature:
BLAST of EY664158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DHX16_DICDI1.376e-2334.13Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP16_HUMAN2.347e-2331.28Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP16_BOVIN6.828e-2330.73Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP22_SCHPO1.165e-2230.39Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX15_PONAB1.521e-2237.50Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_MOUSE1.521e-2237.50Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_HUMAN1.521e-2237.50Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
MOG1_CAEEL3.389e-2230.17Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX35_HUMAN3.389e-2234.57Probable ATP-dependent RNA helicase DHX35 OS=Homo ... [more]
PRP43_YEAST1.288e-2134.64Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-063-E05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664158 ID=EY664158; Name=EY664158; organism=Citrus sinensis; type=EST; length=933bp
CCCGGGGAGAATTAGAAGAGGCAAGAAATGCAATGACATCTTTTGCAAGT
CCAGATGGAGATCACCTCACTTTGATTAATGTATATCGAGCATCTGATGA
GTTCTTGGAGAAGAGAAAGATGGAAATTAGTAAGGAAAAAACTGAAAAAA
TTCTGAGAAAATGGTGCAAGGATAATTTTATTAATAGCCGGTCTTTGAGG
CATGCTCGGGACATCCACAGTCAAATTCGAGGACATGTTGAACAAATGGG
TTTTCGTATATCTTCTTGTGGAGAAGACATGATTATGTTCCGCAGATGTC
TTGCTGCTTCCTTTTTCCTCAATGCAGCTTTGAAGCAGCCCGAGGGGACA
TACAGGGCTTTGGCAGGTGGTCAGGTGGTGCAGATTCATCCTTCTTCTGT
CTTATTTCGAGCAAAACCAGAGTGCATAGTATTCAATGAACTGATCCAAA
CTAATCACAAATATATCCGGAACATAACTAGAATTGACTACTTATGGTTG
ACTGAATTGGCTCCTCAATATTATACCATGCAGAATTAAAATATTCAATT
ACAAACAGTAACAGCTTGATGTCTCAATTCTATCTCGCATCATCGAAATG
GGAGCAAGTAGATCAAAATTCTTTCACTGATTTACATTGCTGGTTGTTGG
GAGCAAGTAAATGTTTCTGCTGGGAACTATGGGGAAGTCAAAACTTGATG
TTAAGATGCATTACTGGTCCTATTCTTTTGAAAATGTTGCTGAACAGGTG
GCTGCAAAAGTTTGAGAAGCTTCGCTGCACTACAAACAGGCTGGGGTGGT
GCCCATGATTTTACATGAGCTACTTTGTGGGCCTCACAAGTTGGGTTGGA
AAATCTGCTGTTTGGGGTCAGAATCAGGATGTTTGAATGATTGAGAAATG
ACACTCACCGATTTGGGCTAGTTACCGCGCCTA
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