EY664158

Overview
NameEY664158
Unique NameEY664158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length933
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX35_PONAB (Probable ATP-dependent RNA helicase DHX35 OS=Pongo abelii GN=DHX35 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.682e-21
Identity = 56/162 (34.57%), Postives = 88/162 (54.32%), Query Frame = 3
Query:   42 FASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKP-ECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYY 524
            FA  +GDHLT++NVY A   F++  K             +WC+++F+N + L  A  +  Q++  + +      S   D     RC+ + FF NAA     G YR +     + IHP+SVL+  KP   +++NE+IQT+  Y+R++T I+  WL ELAP +Y
Sbjct:  538 FAVEEGDHLTMLNVYEA---FIKHNKNS-----------QWCQEHFLNYKGLVRAATVREQLKKLLVKFQVPKKSSEGDPDPVLRCIVSGFFANAARFHSTGAYRTIRDDHELHIHPASVLYAEKPPRWVIYNEVIQTSKYYMRDVTAIESAWLLELAPHFY 685          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: PRH1_SCHPO (Probable ATP-dependent RNA helicase prh1 OS=Schizosaccharomyces pombe GN=prh1 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.869e-21
Identity = 58/173 (33.53%), Postives = 91/173 (52.60%), Query Frame = 3
Query:   15 EEARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSC----GEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQY 521
            +EA  A   F   +GD LT +N  R   ++LE          +    ++WC  NFIN R+L+   DI  Q+R H  + G+ ++S      E++++      + +  N AL  P+G+YR + G Q + IHPSS LF  K E I+++EL+ T   Y+R ++ I   WL  +AP Y
Sbjct:  556 DEAIEARLKFLHSEGDLLTCLNALR---QYLES---------SHDSRKQWCSQNFINRRALKTILDIRKQLREHCLKDGWELNSSPEVNSENLLL---SFLSGYITNTALLHPDGSYRTIIGNQTISIHPSSSLFGKKVEAIMYHELVFTTKSYVRGVSSIRSNWLNAVAPHY 713          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX16_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-4 OS=Caenorhabditis elegans GN=mog-4 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.747e-21
Identity = 52/174 (29.89%), Postives = 91/174 (52.30%), Query Frame = 3
Query:    3 RGELEEARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYY 524
            + ++  A +A   F SP GDH+TL+NVY              +K +     ++WC +N++  R+++ ARD+  Q+ G +E++     S   D I  R+ + A +F N +     G Y+ +        HP+S LF   P  +V+ EL+ T+ +++R ++ I+  WL E+AP YY
Sbjct:  824 KAQVIHADSARKGFWSPAGDHITLMNVY--------------NKWQESSFSQRWCVENYVQHRTMKRARDVRDQLVGLLERVEIETKS-STDTIKIRKAITAGYFYNVSKLDNTGHYKTVKHKHTTHPHPNSCLFEETPRWVVYFELVFTSKEFMREMSEIESGWLLEVAPHYY 982          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX15_CAEEL (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.747e-21
Identity = 60/177 (33.90%), Postives = 91/177 (51.41%), Query Frame = 3
Query:   18 EARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCG----EDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN 536
            EA  A   FA  DGDHLTL+NVY +  +  E  +              WC DNFIN R+++ A  + +Q+   +++   R  S      +  +  R+ L A FF+  A  +  G Y  +   Q+V +HPS+VL   KPE  ++NE + T   +IR +T +   WL ++APQYY + N
Sbjct:  553 EADEAKARFAHIDGDHLTLLNVYHSFKQNQEDPQ--------------WCYDNFINYRTMKTADTVRTQLSRVMDKYNLRRVSTDFKSRDYYLNIRKALVAGFFMQVAHLERSGHYVTVKDNQLVNLHPSTVLDH-KPEWALYNEFVLTTKNFIRTVTDVRPEWLLQIAPQYYDLDN 714          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: CDC28_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28 OS=Schizosaccharomyces pombe GN=cdc28 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 3.172e-20
Identity = 55/180 (30.56%), Postives = 95/180 (52.78%), Query Frame = 3
Query:    3 RGELEEARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFR-ISSCGEDMIMFRRCLAASFFLNAALKQPEG-TYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN 536
            + ++ EA  A  +F  P GDHLTL++++   +E+++                 W ++NF+  +SL  ARD+  Q+    E++    +++  E +   ++ + A +F NAA     G +YR +   Q V IHPSS +   KP+ I++ EL+ T  +Y R IT I   WL E++P Y+  +N
Sbjct:  877 KDKIMEADKARANFTQPGGDHLTLLHIW---NEWVDT-----------DFSYNWARENFLQYKSLCRARDVRDQLANLCERVEIELVTNSSESLDPIKKAITAGYFSNAARLDRSGDSYRTVKSNQTVYIHPSSSVAEKKPKVIIYFELVLTTKEYCRQITEIQPEWLLEISPHYFKPEN 1042          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX15_SCHPO (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe GN=prp43 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.143e-20
Identity = 60/170 (35.29%), Postives = 86/170 (50.59%), Query Frame = 3
Query:   42 FASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGED----MIMFRRCLAASFFLNAALKQPEG-TYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN 536
            F  PDGDHLTL+NVY A               K+ +    WC ++F++ R+L  A ++  Q+R  +E+    + S   D     +  RR L + FF+  A K   G  Y  +   QVV +HPS  L    PE +V+NE + T   +IRN+T I   WL ELAP YY + +
Sbjct:  554 FTHPDGDHLTLLNVYHAY--------------KSGEGTADWCWNHFLSHRALISADNVRKQLRRTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQVVSLHPSCGL-SVTPEWVVYNEFVLTTKSFIRNVTAIRPEWLIELAPNYYDLDD 708          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX15_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 9.229e-20
Identity = 58/177 (32.77%), Postives = 91/177 (51.41%), Query Frame = 3
Query:   18 EARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMF----RRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN 536
            EA +A  SF   DGDHLT++NVY +  +  E                 WC DNF+N R+++ A  + SQ+   + +    + S   +   +    ++C+AA FF+  A  + +  Y  L   Q V  HPS+ L R +PE  ++NE + T+  YIR IT + + WL ELAP Y+  ++
Sbjct:  536 EADSAKKSFDHFDGDHLTMLNVYHSFKKNGEDPT--------------WCYDNFLNHRAIKQADSVRSQLARILTRFKLPLVSGDVNSKFYYENIKKCIAAGFFMQVAKCEKKNIYFTLGDEQSVIFHPSTGLTR-RPEFCIYNEFVLTSENYIRTITDVKFDWLLELAPSYFKQKS 697          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX15_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.580e-19
Identity = 56/178 (31.46%), Postives = 88/178 (49.44%), Query Frame = 3
Query:   21 ARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDM------IMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAKPECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQN 536
            A  A   F   DGDHLTL+NVY A             K+  E     WC +NF+N+R+++ A ++  Q+   + +  F +  C  D       +  R+ + A +F+  A  +  G Y  +   QVV +HPS+ L   KPE +++NE + T   +IR +T I   WL ++A  YY + N
Sbjct:  541 ADEAKARFGHIDGDHLTLLNVYHAY------------KQNNED--PNWCFENFVNNRAMKSADNVRQQLVRIMSR--FNLKMCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDH-KPEWVIYNEYVLTTRNFIRTVTDIRGEWLVDVAQHYYDLSN 701          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.939e-15
Identity = 48/175 (27.43%), Postives = 86/175 (49.14%), Query Frame = 3
Query:   15 EEARNAMTSFASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQIRGHVEQMGFRISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHPSSVLFRAK--PECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYYTMQ 533
            EE+  A   F  P+ DHL L+N+Y+                +       WC  +F++S++L+ ARDI  Q+   + +    + S   D  + RR L +++F  AA  +  G Y  L  G    +H +S L+     P+ ++++EL+ T+ +Y+  +T +D  WL E    YY+++
Sbjct:  952 EESDAAREKFNVPESDHLMLLNIYQ--------------HWQRNGYSNSWCSKHFLHSKTLKRARDIRQQLVEIMSKQKISLESVS-DWDIVRRVLCSAYFHQAACAKGIGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDPYWLAEFGGVYYSVK 1111          
BLAST of EY664158 vs. ExPASy Swiss-Prot
Match: DHX35_CAEEL (Probable ATP-dependent RNA helicase DHX35 homolog OS=Caenorhabditis elegans GN=Y67D2.6 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.525e-14
Identity = 54/169 (31.95%), Postives = 91/169 (53.85%), Query Frame = 3
Query:   42 FASPDGDHLTLINVYRASDEFLEKRKMEISKEKTEKILRKWCKDNFINSRSLRHARDIHSQI-----RGHVEQMGFR-ISSCGEDMIMFRRCLAASFFLNAALKQPEGTYRALAGGQVVQIHP-SSVLFRAK-PECIVFNELIQTNHKYIRNITRIDYLWLTELAPQYY 524
            FA  +GDH+T++NV+    +F+E  +            +KWC D+F+N R L  A ++ SQ+     R  +E++  R + +C E++   R+CL   FF  AA     G Y  +       ++  SS++F+   P+ ++F E++Q +   IR++T I+  WL ELAP YY
Sbjct:  557 FAVEEGDHMTMLNVFT---KFVENGRS-----------KKWCSDHFVNYRGLMRADNVRSQLVRLLKRFEIEKVSSRGLINCSENI---RQCLVTGFFSQAAQYHYTGKYMTVKESFPFNMYKGSSIMFKKDYPKWVIFTEVMQDS---IRDVTVIEPEWLYELAPHYY 705          
The following BLAST results are available for this feature:
BLAST of EY664158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DHX35_PONAB1.682e-2134.57Probable ATP-dependent RNA helicase DHX35 OS=Pongo... [more]
PRH1_SCHPO2.869e-2133.53Probable ATP-dependent RNA helicase prh1 OS=Schizo... [more]
DHX16_CAEEL3.747e-2129.89Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_CAEEL3.747e-2133.90Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
CDC28_SCHPO3.172e-2030.56Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX15_SCHPO4.143e-2035.29Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_DICDI9.229e-2032.77Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX15_ARATH4.580e-1931.46Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP16_SCHPO8.939e-1527.43Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX35_CAEEL1.525e-1431.95Probable ATP-dependent RNA helicase DHX35 homolog ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-063-E05-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664158 ID=EY664158; Name=EY664158; organism=Citrus sinensis; type=EST; length=933bp
CCCGGGGAGAATTAGAAGAGGCAAGAAATGCAATGACATCTTTTGCAAGT
CCAGATGGAGATCACCTCACTTTGATTAATGTATATCGAGCATCTGATGA
GTTCTTGGAGAAGAGAAAGATGGAAATTAGTAAGGAAAAAACTGAAAAAA
TTCTGAGAAAATGGTGCAAGGATAATTTTATTAATAGCCGGTCTTTGAGG
CATGCTCGGGACATCCACAGTCAAATTCGAGGACATGTTGAACAAATGGG
TTTTCGTATATCTTCTTGTGGAGAAGACATGATTATGTTCCGCAGATGTC
TTGCTGCTTCCTTTTTCCTCAATGCAGCTTTGAAGCAGCCCGAGGGGACA
TACAGGGCTTTGGCAGGTGGTCAGGTGGTGCAGATTCATCCTTCTTCTGT
CTTATTTCGAGCAAAACCAGAGTGCATAGTATTCAATGAACTGATCCAAA
CTAATCACAAATATATCCGGAACATAACTAGAATTGACTACTTATGGTTG
ACTGAATTGGCTCCTCAATATTATACCATGCAGAATTAAAATATTCAATT
ACAAACAGTAACAGCTTGATGTCTCAATTCTATCTCGCATCATCGAAATG
GGAGCAAGTAGATCAAAATTCTTTCACTGATTTACATTGCTGGTTGTTGG
GAGCAAGTAAATGTTTCTGCTGGGAACTATGGGGAAGTCAAAACTTGATG
TTAAGATGCATTACTGGTCCTATTCTTTTGAAAATGTTGCTGAACAGGTG
GCTGCAAAAGTTTGAGAAGCTTCGCTGCACTACAAACAGGCTGGGGTGGT
GCCCATGATTTTACATGAGCTACTTTGTGGGCCTCACAAGTTGGGTTGGA
AAATCTGCTGTTTGGGGTCAGAATCAGGATGTTTGAATGATTGAGAAATG
ACACTCACCGATTTGGGCTAGTTACCGCGCCTA
back to top