EY664145

Overview
NameEY664145
Unique NameEY664145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.209e-22
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  328 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            P  ++ D ++PGG FDPLGLA DP+  A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  171 PLGEVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 244          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.191e-22
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  328 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            P  ++ D ++PGG FDPLGLA DP+ FA LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENLA HL+ P  NN
Sbjct:  178 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNN 251          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.474e-22
Identity = 49/71 (69.01%), Postives = 59/71 (83.10%), Query Frame = 1
Query:  337 DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            ++ D L+ GG FDPLGL  DP++FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  182 EVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNN 252          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.474e-22
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  328 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            P  ++ D ++PGG FDPL LA DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL++P  NN
Sbjct:  160 PLGEVTDPIYPGGSFDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNN 233          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.150e-22
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  346 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            D L+PG  FDPLGLA DPD FA LKVKEIKNGRLAMFA LGFF+QA VTG+GP+ENL  HL++P  NN
Sbjct:  195 DPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENN 262          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.338e-22
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  346 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            D L+PG  FDPLGLA DPD FA LKVKEIKNGRLAMF+  GFF+QA VTG+GP++NLA HL+DP  NN
Sbjct:  177 DPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNN 244          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.338e-22
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 1
Query:  328 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            P  + ED L+PGG FDPL    DP+ FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:   39 PLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 112          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.338e-22
Identity = 50/68 (73.53%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  346 DKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            D L PGG FDPLGLA DP+  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENL  HL+DP ANN
Sbjct:  187 DPLLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANN 254          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.220e-21
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  328 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            P  ++ D L+PGG FDPLGLA+ P  FA LKVKEIKNGRLAMF+M GFF+QA VTG+GP+E+LA H++DP  NN
Sbjct:  181 PLGEIVDPLYPGGSFDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNN 254          
BLAST of EY664145 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.593e-21
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 1
Query:  328 PS*DLEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFAMLGFFLQAYVTGEGPVENLAKHLSDPFANN 549
            P  ++ D L+PGG FDPLGLA+ P+ FA LKVKE+KNGRLAMF+M GFF+ A VTG+GP+ENLA HL+DP  NN
Sbjct:  143 PLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNN 216          
The following BLAST results are available for this feature:
BLAST of EY664145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CB22_SOYBN3.209e-2266.22Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_SOYBN4.191e-2266.22Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB48_MAIZE5.474e-2269.01Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB21_SOYBN5.474e-2266.22Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2_DUNSA7.150e-2273.53Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO9.338e-2272.06Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_RAPSA9.338e-2267.57Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_PINTH9.338e-2273.53Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_WHEAT1.220e-2166.22Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA1.593e-2166.22Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-063-D03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664145 ID=EY664145; Name=EY664145; organism=Citrus sinensis; type=EST; length=896bp
TACCGCATTACCATTACTAGTCAAAAGCATATTCTAAAGTTAAAAGTGTA
GCGAATTTGATAATTATAGTCATCATATATCATTTAGTTAAGCAAACACA
AATAGTCAGTTAGTTGCGTGCAAGGACTACATTCAATCTGCTTCCTTTCA
AGCAAAGTGCAAAGTTCAAATTCAATTAAACGTTAAAAAATTACAAAAAA
CTTTAGAGGTGAAATTTCAGAGTCTTTGAAAAGCTTGGGGATGAGTTTTG
AGTTCCATTCGATATGTTCTGGTAGATACATGCATGCATGGTTACCGAAA
CAAAAAAACTCAAACTCTGTGCAATTTCCATCGTAGGATTTGGAGGACAA
GCTTCACCCAGGTGGTCCATTTGACCCACTGGGATTAGCAAAGGATCCTG
ACCAATTTGCATTGCTAAAAGTGAAGGAGATCAAGAATGGAAGACTTGCA
ATGTTTGCCATGCTTGGTTTCTTTCTCCAAGCTTATGTCACAGGTGAAGG
TCCAGTTGAGAACCTTGCTAAACATCTCAGTGATCCTTTTGCCAACAACT
TGCTTACCGTGATCTCCGGAAACGCAGAGAGAGCTCCCACCCTGTGATTT
CAGTTGTTCTGGTGTTCTTTTCACTCGAATCTAAAATGCATTGTACATCT
CATCATCAAGACATTTCCAAGATGTTGAAAACCTAAATGATCATGGCACT
CGAATCCCCTACTCTCTGAGTATAGAGCTNGAGTGGTATTCACCTATAAC
CTCTNCTGTATATCATTTAAGCTAAATTGATNCTTGTCTATGATGCAAGA
CACGTAAGGGGGTAACCAAGTTGGTTGGTGTGGAGTGATTCGCACTCTAC
TCCTAAGAGAGGTCAGAGTTTAGTCCGCTCTCGTTGGATCACACTT
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