EY664122

Overview
NameEY664122
Unique NameEY664122
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664122 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 3.739e-70
Identity = 120/170 (70.59%), Postives = 146/170 (85.88%), Query Frame = 3
Query:   15 ATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAK 524
            ++ A A R+++A A+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL E+ YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA K
Sbjct:    7 SSAAVATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYK 176          
BLAST of EY664122 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.884e-70
Identity = 127/174 (72.99%), Postives = 142/174 (81.61%), Query Frame = 3
Query:    3 MILSATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAK 524
            MI S  V T NRA    A  VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLP++GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA K
Sbjct:    5 MISSPAVTTVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYK 174          
BLAST of EY664122 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.884e-70
Identity = 120/176 (68.18%), Postives = 150/176 (85.23%), Query Frame = 3
Query:    3 MILSATVAT--ANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAK 524
            M+ +A VAT  A+R++ A ASMVAPFTGLKS SAFP T+K++ND++++ SNGG+VQCM+VWPP G KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA K
Sbjct:    5 MLSNAAVATTAASRSAGAQASMVAPFTGLKSVSAFPVTRKSSNDLSTVPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYK 180          
BLAST of EY664122 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 8.330e-70
Identity = 121/172 (70.35%), Postives = 144/172 (83.72%), Query Frame = 3
Query:    9 LSATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAK 524
            + ++ A A R++ A ASMVAPFTGLKS+++FP ++KTN DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LS E LL EI YL+++GW+PCLEFE E G+VYREH  SPGYYDGRYWTMWKLPM+GCTDATQV  EV E +K YP + +RIIGFDN RQVQCISFIA K
Sbjct:    5 IMSSAAVATRSNGAQASMVAPFTGLKSNASFPVSRKTNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYK 176          
BLAST of EY664122 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 8.330e-70
Identity = 118/172 (68.60%), Postives = 149/172 (86.63%), Query Frame = 3
Query:    9 LSATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAK 524
            +S++VAT +R + A A+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP GLKK+ETLSYLPPL++  L KE++YL+R  W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI FIA++
Sbjct:    4 ISSSVATVSRTAPAQANMVAPFTGLKSNAAFPTTKKAN-DFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASR 174          
BLAST of EY664122 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.421e-69
Identity = 122/173 (70.52%), Postives = 145/173 (83.82%), Query Frame = 3
Query:    3 MILSATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAA 521
            +I SA V T NRA +  A++  PFTGLKSS+ FP TKK NNDITSI SNG RV CM+VWPP G KKFETLSYLPPL+DE LLKE+ YL+R GW+PC+EFELEKG+V+R+++ SPGYYDGRYWTMW+LP++G TDA QVLKEV E + EYP +F+RIIGFDN RQVQCISFIA+
Sbjct:    3 LISSAAVTTINRAPV-QANLATPFTGLKSSAGFPVTKK-NNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIAS 173          
BLAST of EY664122 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.421e-69
Identity = 120/172 (69.77%), Postives = 150/172 (87.21%), Query Frame = 3
Query:    9 LSATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAK 524
            +S+TVAT +RA+ A A+MVAPFTGLKS+ AFPATKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+K
Sbjct:    4 ISSTVATVSRAAPAQANMVAPFTGLKSNVAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASK 174          
BLAST of EY664122 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.421e-69
Identity = 125/174 (71.84%), Postives = 145/174 (83.33%), Query Frame = 3
Query:    3 MILSATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAK 524
            +I SA VAT  R ++A ASMVAPF GLKS+ +FP + K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YL+  GW+PCLEFE E G+VYRE+H SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K YP++++RIIGFDN RQVQCISFIA K
Sbjct:    5 VISSAAVAT--RTNVAQASMVAPFNGLKSAVSFPVSSKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYK 176          
BLAST of EY664122 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.421e-69
Identity = 120/174 (68.97%), Postives = 141/174 (81.03%), Query Frame = 3
Query:    3 MILSATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAK 524
            M+ +A +AT    + A ASMVAPF GLKS + FP TKK++ND +S+ SNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+  GWIPC+EFELE  +VYRE+H+SPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RIIGFDNKRQVQC+SFIA K
Sbjct:    5 MLSNAAMATTAATAGAQASMVAPFNGLKSFATFPITKKSSNDFSSLPSNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSFIAYK 178          
BLAST of EY664122 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.856e-69
Identity = 122/172 (70.93%), Postives = 142/172 (82.56%), Query Frame = 3
Query:    9 LSATVATANRASLAHASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAK 524
            + +  A   R + A ASMVAPFTGLKS SAFP TKK+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F RIIGFDN RQVQCISFIA K
Sbjct:    4 MMSNAAVVGRTTPAQASMVAPFTGLKSVSAFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYK 174          
The following BLAST results are available for this feature:
BLAST of EY664122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS1_NICSY3.739e-7070.59Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTO4.884e-7072.99Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_MESCR4.884e-7068.18Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS_STELP8.330e-7070.35Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HELAN8.330e-7068.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_TRIRP1.421e-6970.52Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_FLAPR1.421e-6969.77Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_PETHY1.421e-6971.84Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS1_AMAHP1.421e-6968.97Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS2_MESCR1.856e-6970.93Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-063-B04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664122 ID=EY664122; Name=EY664122; organism=Citrus sinensis; type=EST; length=720bp
CAATGATCTTATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCT
CATGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTT
CCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACG
GCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAG
TTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAA
GGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCG
AGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGGATAC
TACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCAC
AGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACC
CACATTCATTCGTCCGAATTATCGGATTTGACAACAAGCGTCAAGTGCAG
TGCATCAGTTTCATTGCTGCCAAGCCACCATGCGTCTAGGTTCCCAATTA
AATTTGTGTAACCACCCATGCAATATTGGTGATTATTATTATGTGTAACC
CCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAATTTGTA
CTTTGGCTGCTGTTGCTGCTGCTCAAACTTTTTTGGTGTTCTCCCCGAAA
AAAAAAAAATAAAAAAAAAA
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