EY664119

Overview
NameEY664119
Unique NameEY664119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY664119 vs. ExPASy Swiss-Prot
Match: CX6B2_MOUSE (Cytochrome c oxidase subunit 6B2 OS=Mus musculus GN=Cox6b2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.390e-14
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 1
Query:  391 TAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRALCPSDWIDIWNEQRENGTFPGPL 600
            T P D RFP  NQTR+C+  +++YHRCV     +G+    C+ + + + +LCP  W+  WNEQ + GTFPG +
Sbjct:   16 TPPFDPRFPNQNQTRNCYQNFLDYHRCVKTMNRRGKSTQPCEYYFRVFHSLCPISWVQRWNEQIKQGTFPGKI 88          
BLAST of EY664119 vs. ExPASy Swiss-Prot
Match: CX6B1_MOUSE (Cytochrome c oxidase subunit 6B1 OS=Mus musculus GN=Cox6b1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 9.781e-14
Identity = 30/74 (40.54%), Postives = 48/74 (64.86%), Query Frame = 1
Query:  388 ETAPADFRFPTTNQTRHCFTRYIEYHRC---VAAKGEGAPECDKFAKYYRALCPSDWIDIWNEQRENGTFPGPL 600
            +TAP D RFP  NQT++C+  Y+++HRC   + AKG     C+ + + Y++LCP  W+  W+++   GTFPG +
Sbjct:   13 KTAPFDSRFPNQNQTKNCWQNYLDFHRCEKAMTAKGGDVSVCEWYRRVYKSLCPVSWVSAWDDRIAEGTFPGKI 86          
BLAST of EY664119 vs. ExPASy Swiss-Prot
Match: CX6B2_BOVIN (Cytochrome c oxidase subunit 6B2 OS=Bos taurus GN=COX6B2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.717e-13
Identity = 30/76 (39.47%), Postives = 46/76 (60.53%), Query Frame = 1
Query:  382 KLETAPADFRFPTTNQTRHCFTRYIEYHRCVAA---KGEGAPECDKFAKYYRALCPSDWIDIWNEQRENGTFPGPL 600
            K  T P D RFP  NQTR+C+  +++YHRC+     +G+    C+ + + Y +LCP  W+  W EQ ++GTF G +
Sbjct:   13 KWPTPPFDPRFPNQNQTRNCYQNFLDYHRCIKTMNRRGKSTQPCEYYFRVYHSLCPISWVQRWKEQIKDGTFAGKI 88          
BLAST of EY664119 vs. ExPASy Swiss-Prot
Match: COX6B_DICDI (Probable cytochrome c oxidase subunit 6B OS=Dictyostelium discoideum GN=DDB_G0284693 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.750e-11
Identity = 28/70 (40.00%), Postives = 41/70 (58.57%), Query Frame = 1
Query:  382 KLETAPADFRFPTTNQTRHCFTRYIEYHRCVAAKGEGAPECDKFAKYYRALCPSDWIDIWNEQRENGTFP 591
            +L+TAP + RFP  NQT+HC+  Y++Y+ CV        +C  F     +LCP+ WI  W+EQ+    FP
Sbjct:    5 QLQTAPYNPRFPQQNQTKHCWANYVDYYGCVKHYNGDNSKCQTFFNSMNSLCPAAWISEWDEQKAADLFP 74          
The following BLAST results are available for this feature:
BLAST of EY664119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CX6B2_MOUSE4.390e-1442.47Cytochrome c oxidase subunit 6B2 OS=Mus musculus G... [more]
CX6B1_MOUSE9.781e-1440.54Cytochrome c oxidase subunit 6B1 OS=Mus musculus G... [more]
CX6B2_BOVIN3.717e-1339.47Cytochrome c oxidase subunit 6B2 OS=Bos taurus GN=... [more]
COX6B_DICDI7.750e-1140.00Probable cytochrome c oxidase subunit 6B OS=Dictyo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-063-B01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664119 ID=EY664119; Name=EY664119; organism=Citrus sinensis; type=EST; length=926bp
ATGTAGATCTGTTTTTGCCCATCAATGGCGGAAGCCCAAATCGACAAAAC
TCCCTCCCTAGCCGAGGATTATTTGTTGGAAAAAGAGAAGCAAGATGTAG
CTACAAAACCTGTGGAAGTAAAAGAAGTTGAGAGTGCAGTGACTGCCTCT
TCTGTGGAAGGTGCCACTGATAAAGTTGAAGAAACACCTGCTGCCGCCGC
TGTTGAAGAAAGCAAAGAAGACGCCCCTGCTCCTGCCCCTGAAGAAAGCA
CTGAAGCCAGTTCTGCTTCTCCTGAGGACAGCACTAGTGATACGGCTCCA
GCTGCTGCTGAGGAAAGCAGTGAAACTACGGAAGAGGAAAACTCAGGTGA
TCAGGAAGCCTCATAAGAGACACCAGATATAAAGCTGGAGACTGCACCGG
CAGATTTCCGTTTCCCAACCACAAATCAAACAAGGCACTGCTTTACCCGA
TATATTGAGTATCATCGGTGTGTAGCTGCTAAGGGAGAGGGTGCTCCAGA
GTGTGATAAATTTGCAAAATATTACCGTGCTCTATGCCCTAGTGACTGGA
TAGATATATGGAATGAGCAAAGAGAAAACGGAACCTTTCCAGGTCCTCTG
TAGGTGGGTGCCATTTTACGAACATGGGTGTGATTCGCATCCTGCGGGTA
AATTAATNGTGCTACTCATAANCATATGAGTNATTTCTTGACTGAGAAGT
GATTTCTCAGGGATCTTTTNCTAAAATCATGAGTTAATAATTTTTTTGAC
TNGCTAATAGTGTTGTCAAGTCTCATACACAGGGGTATCTCTTAAGATGA
ATTTTTTCTNCGCAGTGCACTTATGTTGGTGCGGGCATGTGGGGTATTTA
ATAGGTATNCGATGGACCCAACTGATCGTACATTATGTCTGCGGATAAGA
TGGCTCATAGCCTAAGAATGATGATT
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