EY664118

Overview
NameEY664118
Unique NameEY664118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10915 contig Csv1_Contig10915:64..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664118 vs. ExPASy Swiss-Prot
Match: HOX6_ORYSI (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica GN=HOX6 PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 1.177e-22
Identity = 51/105 (48.57%), Postives = 76/105 (72.38%), Query Frame = 3
Query:  543 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPXQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKAKAEVLTLTDKLQVKEKRG 857
            ++K+R + +Q++ LE  F  + KLEP +K+QLA++LGLQP QVAIWFQN+RARWK+KQLE++Y  L++ Y++L   Y++L KEK     ++  L + LQ  E RG
Sbjct:   29 DRKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEMLQ--EPRG 131          
BLAST of EY664118 vs. ExPASy Swiss-Prot
Match: HOX22_ORYSJ (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. japonica GN=HOX22 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.786e-21
Identity = 50/108 (46.30%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  543 EKKRRLTVDQVQFLEKSFEVEN-KLEPERKIQLAKDLGLQPXQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKAKAEVLTLTDKLQVKEKRG*N 863
            E+KRR T +Q++ LE  F   + KLEP  K +LA++LGLQP QVAIWFQN+RARW++KQLE DY  L++ Y++L +  ++L +EK     ++  L ++L+ +E+R  N
Sbjct:   72 ERKRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLREREERSGN 179          
BLAST of EY664118 vs. ExPASy Swiss-Prot
Match: HOX22_ORYSI (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica GN=HOX22 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.786e-21
Identity = 50/108 (46.30%), Postives = 76/108 (70.37%), Query Frame = 3
Query:  543 EKKRRLTVDQVQFLEKSFEVEN-KLEPERKIQLAKDLGLQPXQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKAKAEVLTLTDKLQVKEKRG*N 863
            E+KRR T +Q++ LE  F   + KLEP  K +LA++LGLQP QVAIWFQN+RARW++KQLE DY  L++ Y++L +  ++L +EK     ++  L ++L+ +E+R  N
Sbjct:   72 ERKRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLREREERSGN 179          
BLAST of EY664118 vs. ExPASy Swiss-Prot
Match: HOX24_ORYSI (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. indica GN=HOX24 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.454e-20
Identity = 51/103 (49.51%), Postives = 71/103 (68.93%), Query Frame = 3
Query:  543 EKKRRLTVDQVQFLEKSFEVEN-KLEPERKIQLAKDLGLQPXQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKAKAEVLTLTDKLQVKE 848
            E+KRR T +QV+ LE +F     KLEP  K +LA++LGLQP QVAIWFQN+RARW++KQ+E DY  L+  Y++L A  ++L +EK    A+V  L  KL  ++
Sbjct:   64 ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALAAQVDELRGKLNERQ 166          
BLAST of EY664118 vs. ExPASy Swiss-Prot
Match: ATB40_ARATH (Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.186e-20
Identity = 51/102 (50.00%), Postives = 73/102 (71.57%), Query Frame = 3
Query:  546 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPXQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKAKAEVLTLTDKLQVKEK 851
            +KR+LT +QV  LE SF  E+KLE ERK +LA +LGL P QVA+WFQNRRARWK K+LE++Y+ L+NS       +DN+  +K + ++EV+ L ++L   E+
Sbjct:   56 RKRKLTDEQVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNS-------HDNVVVDKCRLESEVIQLKEQLYDAER 150          
BLAST of EY664118 vs. ExPASy Swiss-Prot
Match: HOX24_ORYSJ (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. japonica GN=HOX24 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.218e-19
Identity = 50/103 (48.54%), Postives = 70/103 (67.96%), Query Frame = 3
Query:  543 EKKRRLTVDQVQFLEKSFEVEN-KLEPERKIQLAKDLGLQPXQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKAKAEVLTLTDKLQVKE 848
            E+KRR T +QV+ LE +F     KLEP  K +LA++LGLQP QVAIWFQN+RARW++KQ+E DY  L+  Y++L A  ++L +EK     +V  L  KL  ++
Sbjct:   63 ERKRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKLNERQ 165          
BLAST of EY664118 vs. ExPASy Swiss-Prot
Match: ATB51_ARATH (Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana GN=ATHB-51 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.077e-19
Identity = 45/88 (51.14%), Postives = 65/88 (73.86%), Query Frame = 3
Query:  546 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPXQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKAKA 809
            KK+RLT  Q+  LE+SF+ E KL+ +RK++L+++LGLQP Q+A+WFQNRRARWK KQLE+ YD L+  Y+ +  +   L  E +K +A
Sbjct:   78 KKKRLTSGQLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHDEVKKLRA 165          
BLAST of EY664118 vs. ExPASy Swiss-Prot
Match: ATB22_ARATH (Homeobox-leucine zipper protein ATHB-22 OS=Arabidopsis thaliana GN=ATHB-22 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.077e-19
Identity = 48/117 (41.03%), Postives = 79/117 (67.52%), Query Frame = 3
Query:  513 EDLDEYFHQPEKKRRLTVDQVQFLEKSFEVE--------NKLEPERKIQLAKDLGLQPXQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKAKAEVLTLTDKLQ 839
            E+ + +  Q +KK+++T +Q++FLE+SF+ E         KL P+RK++L+K+LGLQP Q+A+WFQNR+ARWK KQLE       + Y SL+ ++D + +EKE  + E++ L   ++
Sbjct:   60 EESNSFNGQEKKKKKMTSEQLKFLERSFQEEIKLNPDRKMKLNPDRKMKLSKELGLQPRQIAVWFQNRKARWKNKQLE-------HLYESLRQEFDIVSREKELLQEELIQLKSMIR 169          
BLAST of EY664118 vs. ExPASy Swiss-Prot
Match: ATB21_ARATH (Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.346e-18
Identity = 51/117 (43.59%), Postives = 77/117 (65.81%), Query Frame = 3
Query:  501 ENGDEDLDEYFHQPEKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPXQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKAKAEVLTLTDKLQVKEK 851
            E G+ + + +F    +KR+L+ +QV+ LE SFE ++KLE ERK +LA +LGL P QVA+WFQNRRARWK K++E +Y  L+N+       Y+    EK +  +EV+ L ++L   E+
Sbjct:   50 EEGENEGNGWF----RKRKLSDEQVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKNA-------YETTVVEKCRLDSEVIHLKEQLYEAER 155          
BLAST of EY664118 vs. ExPASy Swiss-Prot
Match: ATB53_ARATH (Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana GN=ATHB-53 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.539e-17
Identity = 46/105 (43.81%), Postives = 73/105 (69.52%), Query Frame = 3
Query:  546 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPXQVAIWFQNRRARWKTKQLEKDYDVLQNSYNS-------LKADYDNLFKEKEKAKAEVLTLTDKLQ 839
            +KR+LT +QV  LE SF  E+KLE  RK ++A +LGL P QVA+WFQNRRARWK K+LE++Y  L+N +++       L++    L ++  +A++E+  L+++L+
Sbjct:   71 RKRKLTDEQVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDNVVLGQCQLESQILKLTEQLSEAQSEIRKLSERLE 175          
The following BLAST results are available for this feature:
BLAST of EY664118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
HOX6_ORYSI1.177e-2248.57Homeobox-leucine zipper protein HOX6 OS=Oryza sati... [more]
HOX22_ORYSJ3.786e-2146.30Homeobox-leucine zipper protein HOX22 OS=Oryza sat... [more]
HOX22_ORYSI3.786e-2146.30Homeobox-leucine zipper protein HOX22 OS=Oryza sat... [more]
HOX24_ORYSI2.454e-2049.51Homeobox-leucine zipper protein HOX24 OS=Oryza sat... [more]
ATB40_ARATH4.186e-2050.00Homeobox-leucine zipper protein ATHB-40 OS=Arabido... [more]
HOX24_ORYSJ1.218e-1948.54Homeobox-leucine zipper protein HOX24 OS=Oryza sat... [more]
ATB51_ARATH2.077e-1951.14Putative homeobox-leucine zipper protein ATHB-51 O... [more]
ATB22_ARATH2.077e-1941.03Homeobox-leucine zipper protein ATHB-22 OS=Arabido... [more]
ATB21_ARATH1.346e-1843.59Homeobox-leucine zipper protein ATHB-21 OS=Arabido... [more]
ATB53_ARATH2.539e-1743.81Homeobox-leucine zipper protein ATHB-53 OS=Arabido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-063-A12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664118 ID=EY664118; Name=EY664118; organism=Citrus sinensis; type=EST; length=940bp
CCGGNATTACACGCGCGACCCACGCGTCCGCAAACTTCTCACTTCTCCTG
AAACCTCTGACGAACCGCTCTTTCAAATCCTTATATTCTGAGTGATGGGT
ATGAGCAGCCGCTGCTCCCACACATCTCACATAACCGAGATCATAATCAC
CAGCTTCTTTCGTCATAAGTCTTAAATTAAATTTCTTCTCGACTGTTGAA
TCATCGCATCATCTTTAGCGATGGCTGCTTAAAAGATTAAGAATATTAGT
TTTAAGTTAAATGGCGGGTGGGAGGATGTATAATCAAAATAGTTCTAGTG
GTGGTGGTACTTCAAGTCTGTCCTTTCTGATTCAAAGCCAAAAGGGTTCT
TGCTCTAACTCTCAGAATCTTGATGCTTCGTTCCTCTCTGGCCCTTCTCC
TTCTCCTTTTCTTGGACCAAGATCCATGGTGAGCTTTGAAGATGTGCACT
TAGCAAATGGATCCAATAACAGGCCATTTTTCCGCCCATTTGATCGTGAT
GAAAATGGGGATGAGGACTTGGATGAGTACTTTCATCAACCTGAAAAGAA
AAGACGGCTCACGGTTGATCAAGTCCAGTTTCTTGAAAAAAGCTTCGAGG
TAGAGAACAAGCTTGAACCCGAAAGGAAAATTCAACTGGCAAAAGACCTT
GGCTTGCAGCCTANACAGGTTGCGATTTGGTTCCAAAACCGCCGGGCTCG
TTGGAAGACTAAACAGCTCGAGAAGGATTACGATGTATTGCAAAACAGCT
ATAATAGCCTTAAGGCCGATTATGACAATCTCTTCAAGGAGAAAGAAAAA
GCTAAAGCTGAGGTTCTTACGCTCACAGACAAGCTGCAGGTCAAAGAGAA
AAGAGGGTAAAACACAGNAATGCCTGTAGTAAACAGACATTGTCACAAGA
ACACCANCAATTTCANAACCTGTTGCTGATTCTGCTGNCT
back to top