EY664117

Overview
NameEY664117
Unique NameEY664117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length730
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7065 contig Csv1_Contig7065:10..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24_SPOFR (40S ribosomal protein S24 OS=Spodoptera frugiperda GN=RpS24 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.047e-38
Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 3
Query:   87 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 449
            M +   TIRTRKFMTNRLL+RKQ V DVLHPG+  V   E++EKLA+MY V  P+ +FVF F+T+FGGGKSTGF LIYD++D AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+RG
Sbjct:    1 MTEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVFGFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 120          
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24_ICTPU (40S ribosomal protein S24 OS=Ictalurus punctatus GN=rps24 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.918e-37
Identity = 77/117 (65.81%), Postives = 94/117 (80.34%), Query Frame = 3
Query:   99 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 449
            +VT+RTRKFMTNRLL RKQ V+DVLHPG+A V   E++EKLA+MY    P+ +FVF F+T FGGGK+TGF ++YDS+D AKK EPKYRL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFKTQFGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.918e-37
Identity = 75/118 (63.56%), Postives = 95/118 (80.51%), Query Frame = 3
Query:   87 MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKK 440
            M   AV +RTRK +TNRLLSRKQFV++V+HPG+ANV   +LK  +A+++ V DP +IF+F F+T FGGGKSTGFGLIYD+++ AKK+EPKYRL R GL TK + SRKQ KE+KNR KK
Sbjct:    1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFGFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNRLKK 118          
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24_TAKRU (40S ribosomal protein S24 OS=Takifugu rubripes GN=rps24 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.505e-37
Identity = 77/116 (66.38%), Postives = 93/116 (80.17%), Query Frame = 3
Query:  102 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRG 449
            VT+RTRKFMTNRLL RKQ V+DVLHPG+A V   E++EKLA+MY    P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG
Sbjct:    5 VTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEKKKTSRKQRKERKNRMKKVRG 119          
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24_RHIRA (40S ribosomal protein S24 OS=Rhizomucor racemosus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.052e-35
Identity = 75/121 (61.98%), Postives = 91/121 (75.21%), Query Frame = 3
Query:   90 ADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 452
            AD AVTIRTRKF+TNRLL RKQ V+DV+HPG ANV   EL+ K+ +MY   D   + VF F+THFGGGK+TGF LIYD+V++ K FEPK+RL+R GL    +  RKQ KE+KNR KK RGV
Sbjct:   20 ADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKA-DKEVVSVFGFKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGLAEAPKGGRKQRKEKKNREKKFRGV 139          
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24_ORYLA (40S ribosomal protein S24 OS=Oryzias latipes GN=rps24 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.062e-35
Identity = 74/117 (63.25%), Postives = 91/117 (77.78%), Query Frame = 3
Query:  102 VTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGV 452
            VTIRTRKFMTNRLL RKQ V+DVLHPG+A V   E++EKLA+MY    P+ +FVF FRT FGGGK+TGF ++YDS+D AKK EPK+RL  +GL  K + SRKQ  ER+NR KK+R +
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTT-PDVVFVFGFRTQFGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEKKKTSRKQRTERQNRMKKVRSI 120          
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24B_SCHPO (40S ribosomal protein S24-B OS=Schizosaccharomyces pombe GN=rps24b PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 2.592e-34
Identity = 73/119 (61.34%), Postives = 91/119 (76.47%), Query Frame = 3
Query:   96 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRG 449
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+   E++EKLA+MY   D   +  F  RTHFGGG+STGF LIYDS +S KKFEP YRL+R G    ++K +R+Q K+RKNR KK+ G
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKT-DSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFG 120          
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24_YEAST (40S ribosomal protein S24 OS=Saccharomyces cerevisiae GN=RPS24A PE=1 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 3.386e-34
Identity = 77/118 (65.25%), Postives = 93/118 (78.81%), Query Frame = 3
Query:   99 AVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRG 449
            AVTIRTRK ++N LL+RKQFV+DVLHP RANV   EL+EKLA +Y   + +++ VF FRT FGGGKS GFGL+Y+SV  AKKFEP YRL+R GL  KVEK SR+Q K++KNR KKI G
Sbjct:    4 AVTIRTRKVISNPLLARKQFVVDVLHPNRANVSKDELREKLAEVYKA-EKDAVSVFGFRTQFGGGKSVGFGLVYNSVAEAKKFEPTYRLVRYGLAEKVEKASRQQRKQKKNRDKKIFG 120          
BLAST of EY664117 vs. ExPASy Swiss-Prot
Match: RS24A_SCHPO (40S ribosomal protein S24-A OS=Schizosaccharomyces pombe GN=rps24a PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.743e-33
Identity = 69/119 (57.98%), Postives = 92/119 (77.31%), Query Frame = 3
Query:   96 KAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVFIAELKEKLARMYDVKDPNSIFVFKFRTHFGGGKSTGFGLIYDSVDSAKKFEPKYRLIRNGLDTKVEK-SRKQMKERKNRAKKIRG 449
            +AVTIRTRKFMTNRLL RKQ V+D+LHPG+AN+   +L+EKL +MY   D +++  F  RTH+GGG++TGF LIYD V++ KKFEP YRL+R G    ++K +R+Q K+RKNR KK+ G
Sbjct:    3 EAVTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKT-DASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFG 120          
The following BLAST results are available for this feature:
BLAST of EY664117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS24_SPOFR5.047e-3865.2940S ribosomal protein S24 OS=Spodoptera frugiperda... [more]
RS24_ICTPU1.918e-3765.8140S ribosomal protein S24 OS=Ictalurus punctatus G... [more]
RS24_DICDI1.918e-3763.5640S ribosomal protein S24 OS=Dictyostelium discoid... [more]
RS24_TAKRU2.505e-3766.3840S ribosomal protein S24 OS=Takifugu rubripes GN=... [more]
RS24_RHIRA1.052e-3561.9840S ribosomal protein S24 OS=Rhizomucor racemosus ... [more]
RS24_ORYLA3.062e-3563.2540S ribosomal protein S24 OS=Oryzias latipes GN=rp... [more]
RS24B_SCHPO2.592e-3461.3440S ribosomal protein S24-B OS=Schizosaccharomyces... [more]
RS24_YEAST3.386e-3465.2540S ribosomal protein S24 OS=Saccharomyces cerevis... [more]
RS24A_SCHPO3.743e-3357.9840S ribosomal protein S24-A OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-063-A11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY664117 ID=EY664117; Name=EY664117; organism=Citrus sinensis; type=EST; length=730bp
GCCGGNATTCAAAGCTCGACCCACGCGTCCGCGCCTCTCTGGCTATATCT
TTGTCGAGGATTCAGCCGACTTTTAACCAACCAACAATGGCGGACAAGGC
TGTCACCATTCGAACTAGGAAGTTCATGACCAACCGTCTCCTTTCCAGGA
AGCAATTCGTTATTGATGTTCTTCATCCTGGCAGGGCCAATGTTTTCATA
GCTGAGTTGAAGGAGAAGTTGGCAAGGATGTATGATGTGAAGGACCCCAA
CTCAATCTTTGTTTTTAAGTTTCGAACTCACTTTGGAGGTGGGAAATCTA
CCGGCTTTGGTCTGATCTATGATTCAGTTGACAGTGCTAAGAAGTTTGAG
CCCAAGTACAGGCTTATCAGGAATGGACTTGATACCAAGGTAGAGAAGTC
AAGGAAGCAGATGAAGGAAAGGAAGAACAGGGCTAAGAAGATCCGTGGTG
TAAAGAAGACCAAGGCCTCAGATGCTGCCAAGAAGAAGTGAGCAATTGGA
GATTCTTCTGTAGTCTCGAAGCCAATTTTCTGTGATGGAGTTTCTATAAT
AGTCTTTTTTTTTTTTTGGGTTTAGTTCCTGAAATGAAATCTAGTGTGTT
GTGGATTTTGGTGCCATTGGATGTTTAGTTATATTTGCAGATTTTGAGTA
CTCCCCAAAAGACATTTTTGAGTATTGAATGGCAATACATTCGTCTTTAA
CCCTGGGTTTAAAAAAAAAAAAAAAAAAAA
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