EY663529

Overview
NameEY663529
Unique NameEY663529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7849 contig Csv1_Contig7849:1..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY663529 vs. ExPASy Swiss-Prot
Match: FCL_MOUSE (GDP-L-fucose synthetase OS=Mus musculus GN=Tsta3 PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.590e-23
Identity = 64/165 (38.79%), Postives = 99/165 (60.00%), Query Frame = 3
Query:  105 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRKLMDSSKL-ARLGWRAKIELRDGLADTYKWYLENVKQ 590
            +AY  Q+     + +PTN++GP DNF+ E+ HVLP L+ + H AK + +  + VWGTG P R+F++  DLA   ++++ EY  +E   L+VG   EVSIKE AE V EA+ F GE+ +DS+K DG  +K   + KL + L        +  + +T  W+ +N +Q
Sbjct:  155 RAYFQQHGCTFTAVIPTNVFGPYDNFNIEDGHVLPGLIHKVHLAKSSDSA-LTVWGTGKPRRQFIYSLDLARLFIWVLREYSEVEPIILSVGEEDEVSIKEAAEAVVEAMDFNGEVTFDSTKSDGQYKKTASNGKLRSYLPDFRFTPFKQAVKETCTWFTDNYEQ 318          
BLAST of EY663529 vs. ExPASy Swiss-Prot
Match: FCL_DICDI (GDP-L-fucose synthetase OS=Dictyostelium discoideum GN=ger PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.631e-23
Identity = 54/162 (33.33%), Postives = 99/162 (61.11%), Query Frame = 3
Query:  105 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRKLMDSSKLARLGWRAKI-ELRDGLADTYKWYLEN 581
            +AY  +Y     S +PTN+YGP+DN+H  + HV+P L+ + + A  N  +++ + GTG PLR+F++  DLA   V+ ++ Y+ +    L+VG   E+SI ++A  + EA+ F+G+L++D+SK DG  +K   + KL  L        ++  + ++ +W+++N
Sbjct:  154 RAYNEEYGCKFTSVIPTNIYGPHDNYHLTDGHVIPGLIHKTYLAMKNN-QDLTIMGTGKPLRQFIYSYDLAKYFVWTLNNYEEMSPLILSVGEEDEISIADVARLITEAMEFKGKLIFDTSKADGQYKKTASNLKLKSLVPDLTFTPIQQAIKESCQWFIDN 314          

HSP 2 Score: 24.6386 bits (52), Expect = 6.631e-23
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 2
Query:   17 VRENVLLTGPLEPTNEWYAIAK 82
            + E ++  GP  P+NE YA AK
Sbjct:  125 IDETMIHNGPPHPSNEGYAYAK 146          
BLAST of EY663529 vs. ExPASy Swiss-Prot
Match: FCL_DROME (Probable GDP-L-fucose synthetase OS=Drosophila melanogaster GN=Gmer PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.538e-21
Identity = 60/170 (35.29%), Postives = 99/170 (58.24%), Query Frame = 3
Query:  108 AYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKV------NGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEH--LNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRKLMDSSKL-ARLGWRAKIELRDGLADTYKWYLENVKQ 590
            AY  +Y     S +P N++GP+DN++PE SHV+P ++ R H+            K   V+G+G PLR+F++  DLA+ +++++  Y+ +E   L+    +EV+I E+A+ V +A  F G LV D+SK DG  +K   ++KL + L   A  +L   +  + KWY+EN  Q
Sbjct:  149 AYHDKYGRVYTSVIPCNIFGPHDNYNPEVSHVIPGMIYRMHQLVTEKTDVPENDKVFTVFGSGMPLRQFVYSRDLAELMIWVLRNYESVEPIILSADEVQEVTIFEVAQAVAKAFNFNGRLVCDTSKSDGQYKKTASNAKLRSFLPDYAFTDLETAINASVKWYIENYDQ 318          
BLAST of EY663529 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.401e-13
Identity = 34/107 (31.78%), Postives = 63/107 (58.88%), Query Frame = 3
Query:  261 VVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAEWVKEAVGFEGELVWDSSKPDGTPRKLMDSSKLARLGWRAKIELRDGLADTYKWYLEN 581
            +++G G+  R+F++V D+A A +  ++  +  E +N+G+GKE S+ EL + +K  +GF GE ++D  +     R  +D  K   LGW+ +I+L++G+     W   N
Sbjct:  198 IIFGDGNQTRDFVYVGDVAKANLMALNWKN--EIVNIGTGKETSVNELFDIIKHEIGFRGEAIYDKPREGEVYRIYLDIKKAESLGWKPEIDLKEGIKRVVNWMKNN 302          
BLAST of EY663529 vs. ExPASy Swiss-Prot
Match: TGDS_BOVIN (dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TGDS PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.649e-12
Identity = 49/166 (29.52%), Postives = 84/166 (50.60%), Query Frame = 3
Query:  105 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSI----KELAEWVKEAVG---FEGELVWDSSKPDGTPRKLMDSSKLARLGWRAKIELRDGLADTYKWYLEN 581
            Q+Y  QYKF  +    +N+YGP+   +PE   V+P  +     + +   ++  + GTG   R FL+  D+ +A + ++ +    E  N+G+  E+S+    KEL + +KE       E  + +   +P    R  M S K+  LGWR K+  ++G+  T +WY EN
Sbjct:  178 QSYWEQYKFPVVITRSSNVYGPHQ--YPEK--VIPKFI-----SLLQHNRKCCIHGTGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVLQLAKELIQLIKETNSESEMENWVDYVDDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYREN 334          
BLAST of EY663529 vs. ExPASy Swiss-Prot
Match: TGDS_HUMAN (dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=TGDS PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.673e-12
Identity = 48/166 (28.92%), Postives = 85/166 (51.20%), Query Frame = 3
Query:  105 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSI----KELAEWVKEAVG---FEGELVWDSSKPDGTPRKLMDSSKLARLGWRAKIELRDGLADTYKWYLEN 581
            Q+Y  QYKF  +    +N+YGP+   +PE   V+P  +     + +   ++  + G+G   R FL+  D+ +A + ++ +    E  N+G+  E+S+    KEL + +KE       E  + + + +P    R  M S K+  LGWR K+  ++G+  T +WY EN
Sbjct:  178 QSYWEQYKFPVVITRSSNVYGPHQ--YPEK--VIPKFI-----SLLQHNRKCCIHGSGLQTRNFLYATDVVEAFLTVLKKGKPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESEMENWVDYVNDRPTNDMRYPMKSEKIHGLGWRPKVPWKEGIKKTIEWYREN 334          
BLAST of EY663529 vs. ExPASy Swiss-Prot
Match: RHM3_ARATH (Probable rhamnose biosynthetic enzyme 3 OS=Arabidopsis thaliana GN=RHM3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.061e-11
Identity = 44/163 (26.99%), Postives = 81/163 (49.69%), Query Frame = 3
Query:   99 MCQAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSIKELAEWVKEAVGFEGE--LVWDSSKPDGTPRKLMDSSKLARLGWRAKIELRDGLADTYKWYLEN 581
            +  AY   Y    I+    N+YGPN    PE       L+ +F    +NG K + + G GS +R +L+ +D+A+A   ++ + +     N+G+ +E  + ++A  + +  G + +  + +  ++P    R  +D  KL +LGW  +    +GL  T +WY EN
Sbjct:  169 LVMAYGRSYGLPVITTRGNNVYGPNQ--FPEK------LIPKFILLAMNG-KPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEVNHVYNIGTTRERRVIDVANDISKLFGIDPDSTIQYVENRPFNDQRYFLDDQKLKKLGWCERTNWEEGLRKTMEWYTEN 322          
BLAST of EY663529 vs. ExPASy Swiss-Prot
Match: TGDS_MOUSE (dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=Tgds PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.304e-11
Identity = 46/166 (27.71%), Postives = 83/166 (50.00%), Query Frame = 3
Query:  105 QAYQIQYKFNAISGMPTNLYGPNDNFHPENSHVLPALMRRFHEAKVNGAKEVVVWGTGSPLREFLHVDDLADAVVFMMDEYDGLEHLNVGSGKEVSI----KELAEWVKEAVGFEGELVWD---SSKPDGTPRKLMDSSKLARLGWRAKIELRDGLADTYKWYLEN 581
            Q+Y  +YKF  +    +N+YGP+   +PE   V+P  +     + +   ++  + G+G   R FL+  D+ +A + ++ + +  E  N+G+  E+S+    KEL + +KE         W    S +P    R  M S K+  LGW+ K+   +G+  T +WY +N
Sbjct:  178 QSYWERYKFPVVITRSSNVYGPHQ--YPER--VIPKFI-----SLLQHNRKCCIHGSGLQRRNFLYAADVVEAFLTVLTKGEPGEIYNIGTNFEMSVVQLAKELIQLIKETNSESETESWVDYVSDRPHNDMRYPMKSEKIHSLGWKPKVPWEEGIKKTVEWYRKN 334          
The following BLAST results are available for this feature:
BLAST of EY663529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FCL_MOUSE1.590e-2338.79GDP-L-fucose synthetase OS=Mus musculus GN=Tsta3 P... [more]
FCL_DICDI6.631e-2333.33GDP-L-fucose synthetase OS=Dictyostelium discoideu... [more]
FCL_DROME2.538e-2135.29Probable GDP-L-fucose synthetase OS=Drosophila mel... [more]
GALE_METJA7.401e-1331.78Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]
TGDS_BOVIN1.649e-1229.52dTDP-D-glucose 4,6-dehydratase OS=Bos taurus GN=TG... [more]
TGDS_HUMAN3.673e-1228.92dTDP-D-glucose 4,6-dehydratase OS=Homo sapiens GN=... [more]
RHM3_ARATH4.061e-1126.99Probable rhamnose biosynthetic enzyme 3 OS=Arabido... [more]
TGDS_MOUSE5.304e-1127.71dTDP-D-glucose 4,6-dehydratase OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-056-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY663529 ID=EY663529; Name=EY663529; organism=Citrus sinensis; type=EST; length=862bp
TTTCGTCAACCCACGCGTCCGCGAAAACGTTCTCTTGACGGGCCCCTTGG
AGCCGACGAATGAATGGTACGCTATAGCCAAAATATCTGGGCATTAAGAT
GTGCCAGGCTTATCAGATTCAGTATAAATTCAATGCAATTTCTGGGATGC
CCACGAATTTATATGGCCCCAATGATAATTTCCACCCCGAAAACTCCCAC
GTGTTACCCGCTTTGATGAGGAGATTCCACGAAGCTAAGGTGAATGGAGC
TAAGGAAGTGGTGGTGTGGGGCACTGGGAGTCCGTTAAGGGAGTTCTTAC
ACGTTGATGATTTGGCTGATGCAGTGGTTTTCATGATGGACGAGTATGAT
GGACTTGAACATTTGAATGTGGGGAGTGGGAAGGAAGTGAGCATTAAAGA
GTTGGCGGAGTGGGTGAAGGAAGCAGTGGGATTTGAAGGAGAGCTTGTTT
GGGATTCATCCAAGCCAGATGGAACGCCGAGAAAGCTGATGGATAGTTCT
AAGCTTGCCAGGTTGGGGTGGAGGGCAAAGATTGAGCTTAGAGATGGTCT
TGCTGATACTTATAAGTGGTACTTGGAGAATGTTAAGCAATGATGGTAAT
TAAGCTGGTTCATTTTTGTGTTGTTTTATTAGAATTATTGGTCTCATTTG
AATAATATGAATTGATTGCGTGCTATTATGATTAAGGTTGTTATGATTAA
TGAGAGAGATGTTGTAGAACTATTTGGAGCAAACTTTCTNGTGTAATTGA
TAAATTATCAATTTTTATGGTTATTAATTGGGTCTGCAGATACTTATTTT
GTTATCTGCAGACCATGTTATGAATGACCATATATTTTTATGGTGCCAAA
AAAAAAAAAAAA
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