EY663270

Overview
NameEY663270
Unique NameEY663270
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY663270 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.117e-25
Identity = 59/123 (47.97%), Postives = 80/123 (65.04%), Query Frame = 1
Query:  304 IAEYIWIGGTGIDMRSKSKTISKPVEHP---SELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGG-NNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQQN 660
            I EY+WIGG G ++RSK++ +   +      S++P WNYDGSST QA G  SEV LYP+ I++ PFR   N ++VICDTY   G P+ TN RH A  IF   K   E PW+G+EQEY + +++
Sbjct:   20 IIEYVWIGGNG-ELRSKTRVLYSSIMTGYKLSDIPVWNYDGSSTNQANGSSSEVFLYPRNIYRCPFRRNVNGVIVICDTYDVNGVPLETNHRHNANIIF--EKYQNEKPWYGLEQEYFIFRKD 139          
BLAST of EY663270 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.719e-22
Identity = 50/116 (43.10%), Postives = 66/116 (56.90%), Query Frame = 1
Query:  307 AEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQ 654
            AEYIWI GT  +   +SKT  + ++   E   W +DGSST QAPG +S+ +L P     DP RGG+N LV+C+       P PTN   RAA +    + +   P FGIEQEYT  +
Sbjct:    5 AEYIWIDGTEPEPLMRSKT--RIIKDGKEPEIWGFDGSSTNQAPGSNSDCVLRPVFETPDPIRGGDNRLVLCEVQLTDFTP-PTNT--RAAALGVAERYADMSPMFGIEQEYTFFK 115          

HSP 2 Score: 41.5874 bits (96), Expect = 8.719e-22
Identity = 22/67 (32.84%), Postives = 28/67 (41.79%), Query Frame = 2
Query:  671 PLSWPVGAYPGPQGPYYWGXXXXXXXXXXXXXXLYKACLDGCINIRGTT-----GKLSWAVGI*AGP 856
            P  WP   YP PQGPYY G                +ACLD  + I GT      G+  + +G+   P
Sbjct:  119 PYGWPEVGYPAPQGPYYCGVGGSKMPGRQIVERHTQACLDAGLAIEGTNAEVMMGQWEFQIGVLPAP 185          
BLAST of EY663270 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.366e-21
Identity = 52/118 (44.07%), Postives = 67/118 (56.78%), Query Frame = 1
Query:  307 AEYIWIGGTG--IDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQ 654
            AEYIWI GT     +RSK+K I+        LP W +DGSST QA G  S+ +L P     DP RGG++ILV+C+       P  +N R   AE+    + +A+ P FGIEQEYT  Q
Sbjct:    5 AEYIWIDGTEPTAKLRSKTKIITGQPAGLDALPIWGFDGSSTNQAEGHSSDCVLKPVFTCPDPIRGGDDILVLCEVLNIDLTPHASNTRAALAEV--AERFAAQEPIFGIEQEYTFFQ 120          

HSP 2 Score: 30.4166 bits (67), Expect = 1.366e-21
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  671 PLSWPVGAYPGPQGPYYWG 727
            PL +P G +P PQG YY G
Sbjct:  124 PLGFPKGGFPAPQGGYYCG 142          

HSP 3 Score: 23.483 bits (49), Expect = 1.366e-21
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 3
Query:  828 PGQWEFKLAP 857
            PGQWEF++ P
Sbjct:  177 PGQWEFQVGP 186          
BLAST of EY663270 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.110e-19
Identity = 50/118 (42.37%), Postives = 69/118 (58.47%), Query Frame = 1
Query:  301 IIAEYIWIGGTGIDMRSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQ 654
            I AEYIWI GT    + +SKT  K +   S LP+W +DGSST QA G  S+++L P     DP RGG+++LV+C+       P P+N R     +    + + + P FGIEQEYT L+
Sbjct:    3 IKAEYIWIDGTQPTAKLRSKT--KILSDGSRLPRWGFDGSSTNQAEGHASDLVLEPVFSCPDPIRGGDHLLVLCEVLHTDLTPHPSNTRALLRPV--AERFAGQEPIFGIEQEYTFLK 116          

HSP 2 Score: 25.409 bits (54), Expect = 4.110e-19
Identity = 11/20 (55.00%), Postives = 12/20 (60.00%), Query Frame = 2
Query:  671 PLSWPVGA-YPGPQGPYYWG 727
            PL +P G  YP PQ  YY G
Sbjct:  120 PLGFPEGGGYPAPQADYYCG 139          

HSP 3 Score: 20.7866 bits (42), Expect = 4.110e-19
Identity = 6/8 (75.00%), Postives = 8/8 (100.00%), Query Frame = 3
Query:  828 PGQWEFKL 851
            PGQWEF++
Sbjct:  174 PGQWEFQV 181          
BLAST of EY663270 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.636e-15
Identity = 46/115 (40.00%), Postives = 62/115 (53.91%), Query Frame = 1
Query:  310 EYIWIGGTGIDMRSKSKT-ISKPVEHPS--ELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGE-PIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEY 642
            EYIW+ G       + KT I +    P+  +LP W +DGSST QA G  S+ +L P A+F D  R  N +LV+C+   P G+ P  +NKR   A I  ++       WFG EQEY
Sbjct:    7 EYIWLDGYTPTPNLRGKTQIKEFASFPTLEQLPLWGFDGSSTQQAEGHSSDCVLKPVAVFPDAAR-TNGVLVMCEVMMPDGKTPHASNKR---ATILDDAGA-----WFGFEQEY 112          

HSP 2 Score: 34.2686 bits (77), Expect = 1.636e-15
Identity = 14/27 (51.85%), Postives = 15/27 (55.56%), Query Frame = 2
Query:  647 YFNKMWNGPLSWPVGAYPGPQGPYYWG 727
            YF      PL +P   YP PQGPYY G
Sbjct:  112 YFFYKDGRPLGFPTSGYPAPQGPYYTG 138          
BLAST of EY663270 vs. ExPASy Swiss-Prot
Match: GLNA2_RHILP (Glutamine synthetase 2 OS=Rhizobium leguminosarum bv. phaseoli GN=glnII PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 4.204e-12
Identity = 49/122 (40.16%), Postives = 61/122 (50.00%), Query Frame = 1
Query:  298 KIIAEYIWIGGTGIDMRSKSKTISKPV-EHPS--ELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKRHRAAEIFSNSKVSAEVPWFGIEQEYTLLQ 654
            K   EYIW+ G       + KT  K   E P+  +LP W +DGSST QA G  S+ +L P AI+ DP R  N  LV+C+   P G    +N R   A I  +     E  WFG EQEY   Q
Sbjct:    3 KFKLEYIWLDGYTPVPNLRGKTQIKEFDEFPTLEQLPLWGFDGSSTMQAEG-SSDCVLKPVAIYPDPAR-TNGALVMCEVMMPDGHAHASNAR---ATILDD-----EDAWFGFEQEYFFYQ 114          

HSP 2 Score: 26.1794 bits (56), Expect = 4.204e-12
Identity = 13/27 (48.15%), Postives = 14/27 (51.85%), Query Frame = 2
Query:  647 YFNKMWNGPLSWPVGAYPGPQGPYYWG 727
            YF      PL +P   YP PQ PYY G
Sbjct:  110 YFFYQNGRPLGFPEQGYPAPQ-PYYTG 135          
The following BLAST results are available for this feature:
BLAST of EY663270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GLNA_MIMIV4.117e-2547.97Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA2_FRAAL8.719e-2243.10Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA2_STRVR1.366e-2144.07Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_STRHY4.110e-1942.37Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_BRAJA1.636e-1540.00Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]
GLNA2_RHILP4.204e-1240.16Glutamine synthetase 2 OS=Rhizobium leguminosarum ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-053-D04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY663270 ID=EY663270; Name=EY663270; organism=Citrus sinensis; type=EST; length=904bp
GACCCTGCTTCGCATCAGCATTTTGGTTTTACTCTTCAACCAATTTTCAG
GGAGGAGTAGGTGAAAATGGCGCAGATTTTGGCACCTTCTATGCAATGGC
AGATGAGGATGCCTAAGTACTCAAACATTGCAAGTCCTATGACAACAAAG
ATGTGGAGTTCTCTGTTGATGAAGCAGAACAAGAAAGGAACAAATAGGAG
TTCTGCCAAGTTTAGAGTGCTTGCTTTGAAATCTGAAGACAGCACTGTCA
ATAGGCTAGAGGATCTACTCAATTTGGACATCACTCCATATACTGACAAA
ATCATTGCCGAATATATTTGGATTGGAGGTACTGGGATTGATATGCGTAG
CAAGTCAAAGACCATTTCAAAGCCTGTTGAGCATCCATCTGAGCTTCCCA
AGTGGAATTATGATGGATCAAGTACTGGACAGGCACCTGGTGAAGATAGT
GAAGTAATTTTATACCCTCAAGCAATTTTTAAGGACCCCTTCCGTGGAGG
AAACAACATCTTGGTAATTTGTGATACCTACACACCAGCAGGCGAGCCCA
TCCCTACAAACAAACGCCATAGGGCTGCTGAAATTTTCAGTAACTCGAAA
GTGTCTGCTGAAGTTCCATGGTTTGGGATAGAGCAAGAGTACACCCTACT
TCAACAAAATGTGGAATGGGCCTCTGAGTTGGCCTGTTGGAGCCTATCCC
GGTCCCCAGGGTCCTTATTACTGGGGAGCTGGGGCTGATAGGTCGTTTGC
GCGGGACTTTGCAGATGCTCTTTACAAGGCTTGCTTGGATGGCTGCATTA
ACATTAGGGGCACCACGGGGAAGTTATCCTGGGCAGTGGGAATTTAAGCT
GGCCCCAGGGAGGCATTATGCTGGAAAAAATAAGGGGGTCCAAAAACCTC
TTGA
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