EY663252

Overview
NameEY663252
Unique NameEY663252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY663252 vs. ExPASy Swiss-Prot
Match: NSF_ARATH (Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=NSF PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.898e-11
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 3
Query:  459 KFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS-VKGPELLTMWFGESEANVRDIFDKAR--------AAAPCVLFFDELDSIAKSXXXXXXXXXXXXXXXINQILTEMDGMGA 785
            + G++  +G+L +GPPG GKTL+A+ I           V GPE+L+ + GE+E NVRD+F  A         A+   V+ FDE+D+I KS               +NQ+LT++DG+ A
Sbjct:  244 RLGIKHVKGMLLFGPPGTGKTLMARQIGKMLNGKDPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTLGDASELHVIIFDEIDAICKS-RGSTRDGTGVHDSIVNQLLTKIDGVEA 360          
BLAST of EY663252 vs. ExPASy Swiss-Prot
Match: NSF2_DROME (Vesicle-fusing ATPase 2 OS=Drosophila melanogaster GN=Nsf2 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.228e-11
Identity = 49/169 (28.99%), Postives = 85/169 (50.30%), Query Frame = 3
Query:  318 KSSPSALRETVVEVPNVTWEDIG--GLANVKRELQELVQYP----VEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFIS-VKGPELLTMWFGESEANVRDIFDKARA--------AAPCVLFFDELDSIAKSXXXXXXXXXXXXXXXINQILTEMDGM 779
            +S    +R++++   N  W D G  G+  + +E   + +      V  P+   + G++  +G+L YGPPG GKTL+A+ I     A     V GP++L  + GESEAN+R +F +A          +   ++ FDE+D+I K+               +NQ+L ++DG+
Sbjct:  203 RSKGKIVRQSII---NPDW-DFGKMGIGGLDKEFNAIFRRAFASRVFPPELVEQLGIKHVKGILLYGPPGTGKTLMARQIGTMLNAREPKIVNGPQILDKYVGESEANIRRLFAEAEEEEKRLGPNSGLHIIIFDEIDAICKA-RGSVAGNSGVHDTVVNQLLAKIDGV 366          
BLAST of EY663252 vs. ExPASy Swiss-Prot
Match: FTSH_CHLVU (Cell division protease ftsH homolog OS=Chlorella vulgaris GN=ftsH PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.212e-11
Identity = 42/107 (39.25%), Postives = 60/107 (56.07%), Query Frame = 3
Query:  378 DIGGLANVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEA-NVRDIFDKARAAAPCVLFFDELDSIA 695
            DI G+  V  EL E+V +       F      P  G+L  GPPG GKTLL +A+A E Q   I + G  L+    GES A  ++ +F +AR  APC++F DE+D+++
Sbjct:  975 DIVGIQKVLLELYEIVLFLRNSGRNFTHSETLP-HGILLTGPPGTGKTLLVQALAGEAQVPVIVLSGSSLMEP--GESAAFKLQLVFQEARQLAPCIVFIDEIDTLS 1078          
The following BLAST results are available for this feature:
BLAST of EY663252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
NSF_ARATH1.898e-1136.44Vesicle-fusing ATPase OS=Arabidopsis thaliana GN=N... [more]
NSF2_DROME4.228e-1128.99Vesicle-fusing ATPase 2 OS=Drosophila melanogaster... [more]
FTSH_CHLVU7.212e-1139.25Cell division protease ftsH homolog OS=Chlorella v... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-053-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY663252 ID=EY663252; Name=EY663252; organism=Citrus sinensis; type=EST; length=882bp
TTCGTCGACCCACGCGTCCGCGATTTGGTTTATCTGATCGTGAAATTGAT
ATTGGTATTCCTGATGCCACTGGTCGTCTTGAAATCCTGCCCATTCACAC
GAAAAACATGAAATTAGCTGAAGATGTCGACTTGGAACAGATTGCTGCTG
AGACACATGGTCACGTCGGTGCCGACTTGGCATCTCTTTGCTCCGAAGCA
GCTTTGCAGCAAATTAGAGAAAAAATGGATTTGATTGACTTAGACGATGA
TCAAATTGATGCTGAAGTTTTGAATTCTCTAGCTGTCACAATGGAGAACT
TCAGGTATGCCATGAGCAAGAGCTCGCCCAGCGCTCTTCGTGAAACTGTT
GTTGAAGTTCCCAACGTTACTTGGGAAGACATTGGAGGACTTGCAAATGT
CAAACGTGAACTTCAAGAACTTGTACAGTACCCTGTGGAACATCCAGACA
AATTCTTGAAATTCGGTATGCAACCATCTCGTGGAGTTTTGTTCTACGGA
CCTCCTGGTTGTGGTAAGACCTTGTTAGCCAAAGCAATTGCCAATGAATG
TCAGGCTAATTTTATTTCAGTTAAGGGACCAGAATTGCTCACCATGTGGT
TTGGTGAATCAGAAGCCAACGTCAGAGATATTTTTGATAAGGCTCGTGCA
GCTGCTCCTTGTGTATTATTCTTTGATGAATTAGATTCAATTGCCAAGTC
AAGAGGCGGCAACGTAGGAGATGCAGGTGGAGCTGCAGACCGAGTCATCA
ACCAGATTTTGACAGAGATGGATGGTATGGGAGCAAAAAAGATGTTTCAT
CATAGGAGCCACCATAGACCTGATATTATGATCCTGCATTCTCAGACCGG
ACGTTAGATCAGCTAATTATATTCACTGCCGA
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