EY663252

Overview
NameEY663252
Unique NameEY663252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY663252 vs. ExPASy Swiss-Prot
Match: PEX6_SCHPO (Peroxisomal ATPase pex6 OS=Schizosaccharomyces pombe GN=pex6 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.260e-39
Identity = 97/258 (37.60%), Postives = 147/258 (56.98%), Query Frame = 3
Query:   75 RLEILPIHTKNMKLAEDVDLEQIAAETHGHVGADLASL---CSEAALQQIREKMXXXXXXXXXXXAEVLNSLAVTMENFRYAMSKSSPSALRETVVEVPNVTWEDIGGLANVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARAAAPCVLFFDELDSIAKSXXXXXXXXXXXXXXXINQILTEMDGMGA---KKMFHHRSHHRPDIM 830
            RLE+L I+  N+ + + + L+ +A +T+     +L  L    ++AA+ +I  K              ++    V +   R    KS+      T+  VP V W+DIGGL   K  L++ +Q P++ P+ F + G++P  GVL YGPPG GKTLLAKA+A E    F+S+KGPELL M+ GESEANVR++F+KAR ++PCV+FFDELDSIA                 ++Q+L E+D +     K +F   + +RPD++
Sbjct:  560 RLELLKIYANNVIIDKRISLKDVALKTNSMSFGELECLPDHMTKAAVDRI--KRTGYDNDSIILSGPIITEQDVDVSINRIRKEKSN------TIFTVPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ-GLKPRSGVLLYGPPGTGKTLLAKAVATELSLEFVSIKGPELLNMYVGESEANVRNVFEKARNSSPCVIFFDELDSIA-PHRGNSSDSGNVMDRVVSQLLAELDSISKDNNKYVFVIGATNRPDLL 807          
BLAST of EY663252 vs. ExPASy Swiss-Prot
Match: PEX6_PICAN (Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.260e-39
Identity = 105/281 (37.37%), Postives = 153/281 (54.45%), Query Frame = 3
Query:   42 EIDIGIPDATGRLEILPIHTKNMK--------LAEDVDLEQIAAETHGHVGADLASLCSEAALQQIREKMXXXXXXXXXXXAEVLN----SLAVTMENFRYAMSKSSPSALRETV--VEVPNVTWEDIGGLANVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARAAAPCVLFFDELDSIAKSXXXXXXXXXXXXXXXINQILTEMDGM----GAKKMFHHRSHHRPDIM 830
            +I I +P    R  IL     +MK        L  DV L+ +A ++ G    DL S+        I E++            ++L+     + +T E+F  +++ +  +   + +    +P+V WED+GGL  VK E+ + ++ P++HP+ F K GM+   G+LFYGPPG GKTLLAKAIA     NF SVKGPELL M+ GESEANVR +F KAR A PCV+FFDELDS+A                 ++Q+L E+DGM    G   +F   + +RPD++
Sbjct:  690 DISINVPTEPERKLILTDLLDDMKTKDKTPVVLRPDVSLDTLALQSAGLTANDLVSIVDNTITIAI-ERLERLSEEQKVNWDQLLSFNGGRIKLTPEDFETSINDAR-NKFSDMIGAPRIPDVKWEDVGGLDVVKDEILDTIEMPLKHPELFSK-GMKKRSGILFYGPPGTGKTLLAKAIATNFALNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPK-RGNQGDSGGVMDRIVSQLLAELDGMSGAEGGDGVFVVGATNRPDLL 966          
BLAST of EY663252 vs. ExPASy Swiss-Prot
Match: PEX6_CANGA (Peroxisomal biogenesis factor 6 OS=Candida glabrata GN=PEX6 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.181e-37
Identity = 91/245 (37.14%), Postives = 140/245 (57.14%), Query Frame = 3
Query:  108 MKLAEDVDLEQIAAETHGHVGADLASLCSEAALQQIREKMXXXXXXXXXXXAEVLNSLAVTMENFR--YAMSKSSPSALRETVVEVPNVTWEDIGGLANVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARAAAPCVLFFDELDSIAKSXXXXXXXXXXXXXXXINQILTEMDGMGA--KKMFHHRSHHRPDIM 830
            ++ + ++++  ++  + G    D+  + S A    +R+              +++ S+   +E  R  Y+ S  +PS        +PNVTW+D+GGL++VK  + E +  P++HP+ F   G++   G+LFYGPPG GKTLLAKAIA     NF SVKGPELL M+ GESEANVR +F KAR A PCV+FFDE+DS+A                 ++Q+L E+DGM +    +F   + +RPD++
Sbjct:  636 IQCSNEIEISTLSLHSAGLSPYDIQYIISLAVADSLRKCNNYLLWRQNKIKVDMI-SIQNALEKVRSDYSASIGAPS--------IPNVTWDDVGGLSSVKDAIMETIDLPLKHPELFGS-GLKKRSGILFYGPPGTGKTLLAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDEVDSVAPK-RGNQGDSGGVMDRIVSQLLAELDGMSSDGDGVFIIGATNRPDLL 869          
BLAST of EY663252 vs. ExPASy Swiss-Prot
Match: PEX6_DEBHA (Peroxisomal biogenesis factor 6 OS=Debaryomyces hansenii GN=PEX6 PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 9.994e-37
Identity = 97/258 (37.60%), Postives = 139/258 (53.88%), Query Frame = 3
Query:   93 IHTKNMKLAEDVDLEQIAAETHGHVGADLASLCSEAALQQIREKMXXXXXXXXXXXA--EVLNSLAVTM--ENFRYAMSKSSPSALRETV--VEVPNVTWEDIGGLANVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARAAAPCVLFFDELDSIAKSXXXXXXXXXXXXXXXINQILTEMDGM------GAKKMFHHRSHHRPDIM 830
            + T +     D+    +A ++ G    DL S+  +A    I   M              +V N   +T   E+F  A++ +  +   +++    +P+V WEDIGGL  VK E+ + +  P++HP+ F   G++   G+LFYGPPG GKTLLAKAIA     NF SVKGPELL M+ GESEANVR +F KAR A PCV+FFDELDS+A                 ++Q+L E+DGM      G   +F   + +RPD++
Sbjct:  740 VSTVSFSRRHDISFSSLALQSAGLTPRDLMSIIKKAKRLAISRLMGLAKDSNISLEKLIKVGNGGLITWIPEDFNKAINDAR-NQFSDSIGAPRIPDVKWEDIGGLDLVKDEIMDTIDMPLKHPELFSN-GLKKRSGILFYGPPGTGKTLLAKAIATNFSLNFFSVKGPELLNMYIGESEANVRRVFQKARDAKPCVIFFDELDSVAPK-RGNQGDSGGVMDRIVSQLLAELDGMSGGAEGGGDGVFVVGATNRPDLL 994          
BLAST of EY663252 vs. ExPASy Swiss-Prot
Match: PEX6_PICPA (Peroxisomal biogenesis factor 6 OS=Pichia pastoris GN=PEX6 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.705e-36
Identity = 80/162 (49.38%), Postives = 105/162 (64.81%), Query Frame = 3
Query:  357 VPNVTWEDIGGLANVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARAAAPCVLFFDELDSIAKSXXXXXXXXXXXXXXXINQILTEMDGM----GAKKMFHHRSHHRPDIM 830
            +PNV WED+GGL  VK E+ + +  P++HP+ F   G++   G+LFYGPPG GKTLLAKAIA     NF SVKGPELL M+ GESEANVR +F +AR A PCV+FFDELDS+A                 ++Q+L E+DGM    G   +F   + +RPD++
Sbjct:  813 IPNVKWEDVGGLDVVKDEILDTIDMPMKHPELFSN-GIKKRSGILFYGPPGTGKTLLAKAIATNFALNFFSVKGPELLNMYIGESEANVRKVFQRARDAKPCVVFFDELDSVAPK-RGNQGDSEGVMDRIVSQLLAELDGMSGGDGGDGVFVVGATNRPDLL 972          
BLAST of EY663252 vs. ExPASy Swiss-Prot
Match: PEX1_DICDI (Peroxisome biogenesis factor 1 OS=Dictyostelium discoideum GN=pex1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.960e-36
Identity = 94/275 (34.18%), Postives = 143/275 (52.00%), Query Frame = 3
Query:   24 FGLSDREIDIGIPDATGRLEILPIHTK----NMKLAEDVDLEQIAAETHGHVGADLASLCSEAA-LQQIREKMXXXXXXXXXXXAEVLNSLAVTMENFRYAMSKSSPSALRETVVEVPNVTWEDIGGLANVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARAAAPCVLFFDELDSIAKSXXXXXXXXXXXXXXXINQILTEMDGM-GAKKMFHHRSHHRPDIM 830
            FGL+   I++  P    R+EIL  + K     +K  + ++L + +A   G++G D+  +   +  L  I+E               ++    +      Y     +P  L+   +    + W+DIGGL +V+  L+E +++P ++P  F    ++   G+L YGP GCGKTLLA AIA EC  NFISVKGPELL  + G SE  VRD+F +A +A PCVLFFDE DSIA                 +NQ LT++DG+ G   ++   +  RPD++
Sbjct:  752 FGLT---IELQAPTREERVEILERYLKYQGKQLKDQQSLNLMKFSASMEGYLGCDVEQIVDRSIHLSSIKEIENNNNNNDDNDDDNIIEFSIIEKAKEGY-----TPITLKGIKLHSSEIKWQDIGGLDSVRAMLKETIEWPTKYPKLFQSSPLRLRSGILLYGPTGCGKTLLASAIAGECGLNFISVKGPELLNKYIGSSEQGVRDVFSRASSAKPCVLFFDEFDSIA---PRRGHDNSGVTDRVVNQFLTQLDGVEGLTGVYVLAATSRPDLI 1015          
BLAST of EY663252 vs. ExPASy Swiss-Prot
Match: PEX1_HUMAN (Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.478e-36
Identity = 95/264 (35.98%), Postives = 141/264 (53.41%), Query Frame = 3
Query:   60 PDATGRLEILPIHTKN-----MKLAEDVDLEQIAAETHGHVGADLASLCSEAALQQIREKMXXXXXXXXXXXAEVLNSLAVTMENFRYAMSKSSPSALRETVVEVP-NVTWEDIGGLANVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARAAAPCVLFFDELDSIAKSXXXXXXXXXXXXXXXINQILTEMDGM-GAKKMFHHRSHHRPDIM 830
            P+   R EIL    KN     +    D+DL+ +A ET G V  D   L   A   ++  +                  L +T  +F+ A+    P++LR   +  P ++ W+ IGGL  V++ L + +Q P ++P+ F    ++   G+L YGPPG GKTLLA  IA E + NFISVKGPELL+ + G SE  VRDIF +A+AA PC+LFFDE +SIA                 +NQ+LT++DG+ G + ++   +  RPD++
Sbjct:  740 PNQEQRCEILCNVIKNKLDCDINKFTDLDLQHVAKETGGFVARDFTVLVDRAIHSRLSRQSI-----------STREKLVLTTLDFQKALRGFLPASLRSVNLHKPRDLGWDKIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVIARESRMNFISVKGPELLSKYIGASEQAVRDIFIRAQAAKPCILFFDEFESIA---PRRGHDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLI 989          
BLAST of EY663252 vs. ExPASy Swiss-Prot
Match: PEX1_YEAST (Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisiae GN=PEX1 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.443e-35
Identity = 94/262 (35.88%), Postives = 140/262 (53.44%), Query Frame = 3
Query:   60 PDATGRLEILP-IHTKN--MKLAEDVDLEQIAAETHGHVGADLASLCSEAALQQIREKMXXXXXXXXXXXAEVLNSLAVTMENFRYAMSKSSPSALRET-VVEVPNVTWEDIGGLANVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARAAAPCVLFFDELDSIAKSXXXXXXXXXXXXXXXINQILTEMDGM-GAKKMFHHRSHHRPDIM 830
            PD   R ++L    +KN  MKL  D+    ++ ET G    DL  + +E     ++ +                    VT E F  ++S  +PSALR   + +  N+ W DIG LAN K  L E +++P ++   F+   ++   G+L YG PGCGKTLLA A+A +C  NFISVKGPE+L  + G SE N+R++F++A++  PC+LFFDE DSIA                 +NQ+LT+MDG  G   ++   +  RPD++
Sbjct:  603 PDKHARAKLLEYFFSKNQIMKLNRDLQFSDLSLETEGFSPLDL-EIFTEKIFYDLQLERDCDN--------------VVTRELFSKSLSAFTPSALRGVKLTKETNIKWGDIGALANAKDVLLETLEWPTKYEPIFVNCPLRLRSGILLYGYPGCGKTLLASAVAQQCGLNFISVKGPEILNKFIGASEQNIRELFERAQSVKPCILFFDEFDSIAPK---RGHDSTGVTDRVVNQLLTQMDGAEGLDGVYILAATSRPDLI 846          
BLAST of EY663252 vs. ExPASy Swiss-Prot
Match: PEX1_PICPA (Peroxisome biosynthesis protein PAS1 OS=Pichia pastoris GN=PEX1 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.885e-35
Identity = 98/308 (31.82%), Postives = 149/308 (48.38%), Query Frame = 3
Query:   30 LSDREIDIGIPDATGRLEILP--IHTKNMKLAEDVDLEQIAAETHGHVGADLASLCSEAALQQIREK------------------MXXXXXXXXXXXAEVLNSLA--------------------VTMENFRYAMSKSSPSALRETVVEVPNVTWEDIGGLANVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARAAAPCVLFFDELDSIAKSXXXXXXXXXXXXXXXINQILTEMDGM-GAKKMFHHRSHHRPDIM 830
            L + +  +  PD   R +IL   + T N+  +E   L  IA ET G++  DL  LC  A    I                     +           +E+ N ++                    +  +NF  A+S   P +LR   ++  +V W+DIGGL + K  L E +++P ++   F    ++   G+L YG PGCGKTLLA A+A +C  NFIS+KGPE+L  + G SE +VR++F++A+AA PC+LFFDE DSIA                 +NQ+LT+MDG  G   ++   +  RPD++
Sbjct:  644 LIEHDFQLRAPDKEARKQILQSYLDTLNVFCSEGELLNNIAVETEGYLPKDLKVLCDRAYHDLISRDILADSDSELDIEESSTPILNGSVGDIANKQSEIENGISGLELTNNSSSTIAVDKHGATIQKDNFDSALSGYIPQSLRGVKLQKSDVRWDDIGGLRDAKSILLETLEWPTKYAPIFSSCPLRLRSGILLYGYPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERAQAAKPCILFFDEFDSIAPK---RGHDSTGVTDRVVNQMLTQMDGAEGLDGVYVLAATSRPDLI 948          
BLAST of EY663252 vs. ExPASy Swiss-Prot
Match: PEX1_MOUSE (Peroxisome biogenesis factor 1 OS=Mus musculus GN=Pex1 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.222e-34
Identity = 91/264 (34.47%), Postives = 139/264 (52.65%), Query Frame = 3
Query:   60 PDATGRLEILPIHTKNMKLAE-----DVDLEQIAAETHGHVGADLASLCSEAALQQIREKMXXXXXXXXXXXAEVLNSLAVTMENFRYAMSKSSPSALRETVVEVP-NVTWEDIGGLANVKRELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVRDIFDKARAAAPCVLFFDELDSIAKSXXXXXXXXXXXXXXXINQILTEMDGM-GAKKMFHHRSHHRPDIM 830
            P+   R EIL    KN    +     D+DL+ IA +T   V  D   L   A    +  +            +     L +T  +F+ A+    P++LR   +  P ++ W+ IGGL  V++ L + +Q P ++P+ F    ++   G+L YGPPG GKTLLA  +A E   NFIS+KGPELL+ + G SE  VRD+F +A+AA PC+LFFDE +SIA                 +NQ+LT++DG+ G + ++   +  RPD++
Sbjct:  741 PNPEQRCEILHSVVKNKLGCDISNFPDLDLQCIAKDTEAFVARDFTVLVDRAIHSSLSRQ-----------HSSSREDLTLTTSDFQKALRGFLPASLRNVNLHKPRDLGWDKIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVVARESGMNFISIKGPELLSKYIGASEQAVRDVFIRAQAAKPCILFFDEFESIA---PRRGHDNTGVTDRVVNQLLTQLDGVEGLQGVYVLAATSRPDLI 990          
The following BLAST results are available for this feature:
BLAST of EY663252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
PEX6_SCHPO6.260e-3937.60Peroxisomal ATPase pex6 OS=Schizosaccharomyces pom... [more]
PEX6_PICAN6.260e-3937.37Peroxisomal biogenesis factor 6 OS=Pichia angusta ... [more]
PEX6_CANGA1.181e-3737.14Peroxisomal biogenesis factor 6 OS=Candida glabrat... [more]
PEX6_DEBHA9.994e-3737.60Peroxisomal biogenesis factor 6 OS=Debaryomyces ha... [more]
PEX6_PICPA1.705e-3649.38Peroxisomal biogenesis factor 6 OS=Pichia pastoris... [more]
PEX1_DICDI4.960e-3634.18Peroxisome biogenesis factor 1 OS=Dictyostelium di... [more]
PEX1_HUMAN6.478e-3635.98Peroxisome biogenesis factor 1 OS=Homo sapiens GN=... [more]
PEX1_YEAST1.443e-3535.88Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisia... [more]
PEX1_PICPA1.885e-3531.82Peroxisome biosynthesis protein PAS1 OS=Pichia pas... [more]
PEX1_MOUSE1.222e-3434.47Peroxisome biogenesis factor 1 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-053-B10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY663252 ID=EY663252; Name=EY663252; organism=Citrus sinensis; type=EST; length=882bp
TTCGTCGACCCACGCGTCCGCGATTTGGTTTATCTGATCGTGAAATTGAT
ATTGGTATTCCTGATGCCACTGGTCGTCTTGAAATCCTGCCCATTCACAC
GAAAAACATGAAATTAGCTGAAGATGTCGACTTGGAACAGATTGCTGCTG
AGACACATGGTCACGTCGGTGCCGACTTGGCATCTCTTTGCTCCGAAGCA
GCTTTGCAGCAAATTAGAGAAAAAATGGATTTGATTGACTTAGACGATGA
TCAAATTGATGCTGAAGTTTTGAATTCTCTAGCTGTCACAATGGAGAACT
TCAGGTATGCCATGAGCAAGAGCTCGCCCAGCGCTCTTCGTGAAACTGTT
GTTGAAGTTCCCAACGTTACTTGGGAAGACATTGGAGGACTTGCAAATGT
CAAACGTGAACTTCAAGAACTTGTACAGTACCCTGTGGAACATCCAGACA
AATTCTTGAAATTCGGTATGCAACCATCTCGTGGAGTTTTGTTCTACGGA
CCTCCTGGTTGTGGTAAGACCTTGTTAGCCAAAGCAATTGCCAATGAATG
TCAGGCTAATTTTATTTCAGTTAAGGGACCAGAATTGCTCACCATGTGGT
TTGGTGAATCAGAAGCCAACGTCAGAGATATTTTTGATAAGGCTCGTGCA
GCTGCTCCTTGTGTATTATTCTTTGATGAATTAGATTCAATTGCCAAGTC
AAGAGGCGGCAACGTAGGAGATGCAGGTGGAGCTGCAGACCGAGTCATCA
ACCAGATTTTGACAGAGATGGATGGTATGGGAGCAAAAAAGATGTTTCAT
CATAGGAGCCACCATAGACCTGATATTATGATCCTGCATTCTCAGACCGG
ACGTTAGATCAGCTAATTATATTCACTGCCGA
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