EY744411

Overview
NameEY744411
Unique NameEY744411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.542e-19
Identity = 48/133 (36.09%), Postives = 79/133 (59.40%), Query Frame = 2
Query:  218 MRDFKRLQQD--------PPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTEN 589
            M DF R+Q++          +GI   P+ +++      I GP  TP++GGTF++ +   + YP +PP ++F ++++HPNI +  G+ICLDIL++QWSP   +   L SIQ+LL  P P  P ++  A  + +N
Sbjct:    1 MIDFSRIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKN 133          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.630e-19
Identity = 52/153 (33.99%), Postives = 84/153 (54.90%), Query Frame = 2
Query:  212 RLMRDFKRLQQDPPAGIS---------GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL----QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIRGIGEQ 631
            R+ ++ K L  DPP G S         G+   ++    +A I GP+DT +  G F L +Q  E YP +PP V F + ++HPNI   G ICLDIL    +  W P  +++ +LTS++ LL +PNP+     E +R +  N++ ++ + R + E+
Sbjct:   10 RMQKELKLLLSDPPHGASFPHLSSAANGSGDFSTFSTIDAQIEGPEDTVYANGIFNLKIQIPERYPFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEK 162          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.630e-19
Identity = 46/147 (31.29%), Postives = 83/147 (56.46%), Query Frame = 2
Query:  194 STPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIRGIGEQ 631
            S  + +RL +++  L++ P   I     D+++  W     GP D+ + GG F  +L+F  DYP +PPT+ F +R++HPN  ++G++CL IL+ Q + P   + ++L  I  LL +PNP+ P  +  A  +  ++  +++  R   EQ
Sbjct:    5 SPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQ 151          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.651e-19
Identity = 45/136 (33.09%), Postives = 77/136 (56.62%), Query Frame = 2
Query:  266 GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIRGIGEQ 631
            G+ ++    +W+       D+ + G   K  ++F   YP +PPT++FVS+MFHPNIY DG +C+ IL+              ++W+P+ ++  I+ SI  +L  PN +SPAN +A+ M+ +N  EY +E+  I  +
Sbjct:   58 GSMENRDYKVWDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEYIKEVIRIARE 193          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.651e-19
Identity = 42/143 (29.37%), Postives = 82/143 (57.34%), Query Frame = 2
Query:  188 RMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            + ++ A+ R+ +D   L   P    +  P  N ++ +  +I  PD+  +  G F    +   +YP++PP V+  ++++HPNI  DG++CL+IL+  W+P+ ++ +I+  +Q L  +PNP  P N EAA +   N+R++   ++
Sbjct:   22 KKASAAQLRIQKDINELNL-PNTCATDFPDPNDLLNFKLII-SPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVK 162          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.305e-18
Identity = 49/132 (37.12%), Postives = 77/132 (58.33%), Query Frame = 2
Query:  215 LMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREY 601
            L RDF  L+++   GI+  P    +M W   I G  ++ W G  F+LT+ FT +Y   PP V+FV+  FHPN+    G  C+D L N  +W+  Y +++IL ++Q +L +P   +P N EAAR+ T+++  Y
Sbjct:    9 LQRDFYDLKENNYKGITARPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILTKDESLY 140          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.305e-18
Identity = 48/146 (32.88%), Postives = 82/146 (56.16%), Query Frame = 2
Query:  191 MSTPARKRLMRDFKRLQQDPPAG---ISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            M+  A +R+ R+FK + +        I     D +       I GP DTP++GG ++L ++  E YP  PP VRF+++++HPNI +  G+ICLDIL++QW+    +  +L S+Q+LL    P+ P ++  A  + +N   + +  R
Sbjct:    1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 146          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.305e-18
Identity = 48/146 (32.88%), Postives = 82/146 (56.16%), Query Frame = 2
Query:  191 MSTPARKRLMRDFKRLQQDPPAG---ISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            M+  A +R+ R+FK + +        I     D +       I GP DTP++GG ++L ++  E YP  PP VRF+++++HPNI +  G+ICLDIL++QW+    +  +L S+Q+LL    P+ P ++  A  + +N   + +  R
Sbjct:    1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 146          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.305e-18
Identity = 48/146 (32.88%), Postives = 82/146 (56.16%), Query Frame = 2
Query:  191 MSTPARKRLMRDFKRLQQDPPAG---ISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            M+  A +R+ R+FK + +        I     D +       I GP DTP++GG ++L ++  E YP  PP VRF+++++HPNI +  G+ICLDIL++QW+    +  +L S+Q+LL    P+ P ++  A  + +N   + +  R
Sbjct:    1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTAR 146          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.305e-18
Identity = 43/145 (29.66%), Postives = 80/145 (55.17%), Query Frame = 2
Query:  182 AVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            A +  T A+ R+ +D   L   P    +  P    IM +   +  PD+  + GG F+ +     ++P++PP V+ + +++HPNI  +G++CL+IL+  W P+  + A++  +Q L  +PN + P N +AA   T N+ E+ R ++
Sbjct:   18 AKKKVTAAQLRVQKDLSELSL-PSTMKTHFPSAEDIMNFELTV-RPDEGFYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFKRNVK 160          
The following BLAST results are available for this feature:
BLAST of EY744411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UBC27_ARATH1.542e-1936.09Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBC37_ARATH2.630e-1933.99Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC14_SCHPO2.630e-1931.29Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
Y1A1_ENCCU7.651e-1933.09Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC12_DROME7.651e-1929.37NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBE2U_MACFA1.305e-1837.12Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]
UBE2K_MOUSE1.305e-1832.88Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN1.305e-1832.88Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN1.305e-1832.88Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBC12_YARLI1.305e-1829.66NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-008-C11-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744411 ID=EY744411; Name=EY744411; organism=Citrus sinensis; type=EST; length=920bp
AATTGGGACCGCTGACCTGAACGACTCTCTCTCTCTCTCTCTTTTGTTTC
TCTGATCAAATTGAGTACCATGGAATTCTTTCTCTGATACCGCCTGCTTT
TCGATTGTTTCCCGAGAAAAATCTCGCTGCGATTCTGAAGCTTTTACTGC
AATCAACGCTACTTGCCGCGTCAGCTCGTAGGCAGTGAGAATGTCGACTC
CTGCAAGGAAGAGATTGATGAGGGATTTTAAGAGGTTACAACAAGATCCT
CCGGCTGGCATTAGTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAA
TGCTGTTATATTCGGGCCGGATGACACCCCATGGGATGGAGGTACGTTTA
AATTGACACTTCAGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTG
CGCTTTGTTTCTCGGATGTTCCATCCAAATATTTATGCGGATGGAAGCAT
TTGCTTGGACATTCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAG
CAATACTCACGTCAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCT
CCTGCAAATTCGGAGGCCGCACGGATGTTTACCGAGAACAAGCGTGAATA
CAATAGGGAAATACGGGGAATTGGTGAGCAGAATTGGACTGCTGACTAAT
GGGGAACTTGTTGGAATGGAGGGAACTTCCAAAAAAATCCAATGGGCTGG
TCTAAATAACATTTAAAATTTCAAAGGTGGGGGGGGGGAATACTTGAACT
GGTTTAATCGGTTGTTTCCCCCTTTAAAAGGGAGGATGCTTGGCCCCCTT
ATTTGCTTAATATTTTCACCCTCTTACGGCCAATTGTAACCCCCCCCACA
CAAAACCTGGTCGCAGTCGCTATTTCCATGGCCCGTGTGCGGGCTTTAAA
CAGGACGCCAACACAAAAAA
back to top