EY744411

Overview
NameEY744411
Unique NameEY744411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.226e-18
Identity = 50/140 (35.71%), Postives = 82/140 (58.57%), Query Frame = 2
Query:  209 KRLMRDFKRLQQDPPAGIS--GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMF-TENKREYNREIR 616
            KRL +++   Q    +G+       D  +  W AVI GP +TP++GG + L +   E YP  PP+V F +++ HPNI + +G +C+DIL+  WSP + + +   +I SLL + + +SP N +AA++  T +K  YN  +R
Sbjct:    6 KRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVR 145          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.907e-18
Identity = 40/104 (38.46%), Postives = 66/104 (63.46%), Query Frame = 2
Query:  311 FGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            +GP  TP++GG +K+ +   + YP K P++ F++++FHPNI  A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA M+     EY ++I+
Sbjct:   39 YGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIK 142          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.907e-18
Identity = 40/104 (38.46%), Postives = 66/104 (63.46%), Query Frame = 2
Query:  311 FGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            +GP  TP++GG +K+ +   + YP K P++ F++++FHPNI  A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA M+     EY ++I+
Sbjct:   39 YGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIK 142          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.907e-18
Identity = 40/104 (38.46%), Postives = 66/104 (63.46%), Query Frame = 2
Query:  311 FGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            +GP  TP++GG +K+ +   + YP K P++ F++++FHPNI  A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA M+     EY ++I+
Sbjct:   39 YGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIK 142          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.797e-18
Identity = 43/144 (29.86%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  191 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            M++P+++R M   K +  D          ++ + ++     GP D+ + GG +K+ ++  E YP K P+V FV++++HPN+  + G++CLD++   WSP++D+  +  S +  LL  PNP+ P N EAA +   ++  Y  +++
Sbjct:    1 MASPSKRREMDMMKLMMSDYKVDTV----NDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVK 140          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC21_CAEEL (Probable ubiquitin-conjugating enzyme E2 21 OS=Caenorhabditis elegans GN=ubc-21 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.797e-18
Identity = 52/153 (33.99%), Postives = 84/153 (54.90%), Query Frame = 2
Query:  188 RMSTPARKRLMRDFKRLQQDPP---AGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTV---------------RFVSRMFHPNIYAD-GSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTEN 589
            +MS  A  R+ R  K +        AGI    ++N++M     I GP+ TP+ GGTF++ +   E YP +PP V               +FV+R++HPNI +  G+ICLDIL+++W+    +  +L S+Q++LC P P+ P ++  A+ F  N
Sbjct:   14 KMSNLALARVTRKCKEVANASDITEAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTASLTLRTVLLSLQAMLCSPEPSDPQDAVVAKQFINN 166          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.477e-18
Identity = 48/137 (35.04%), Postives = 78/137 (56.93%), Query Frame = 2
Query:  215 LMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            L RDF  L+++   GI+  P    +M W   I G  ++ W G  F+LT+ FT +Y   PP V+F++  FHPN+    G  C+D L N  +W+  Y +++IL ++Q +L +P   +P N EAAR+  +++  Y   +R
Sbjct:    9 LHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILR 145          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.477e-18
Identity = 45/144 (31.25%), Postives = 80/144 (55.56%), Query Frame = 2
Query:  191 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            MS+P+++R M   K +  D    +         + ++    GP D+ + GG +K+ ++ TE YP K P++ F ++++HPN+    GS+CLD++   WSP++D+  I    +  LL  PNP+ P N EAA +   +K  Y  +++
Sbjct:    1 MSSPSKRREMDLMKLMMSDYKVDMINDGMHEFFVHFH----GPKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVK 140          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.459e-18
Identity = 40/143 (27.97%), Postives = 77/143 (53.85%), Query Frame = 2
Query:  188 RMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            + + PA  R  +D   ++   P G + + +D + +L   +   P D  +   TF+ T+     YP  PP V   + ++HPNI  +G +CL+IL+  W P+ ++  ++  + +L  +PNP+ P N +AA++  +NK+ +   +R
Sbjct:   73 KRANPAELRAQKDIDEMEV--PTGCAVSFKDTNDILNFNLSITPTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVR 213          
BLAST of EY744411 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.105e-17
Identity = 44/144 (30.56%), Postives = 80/144 (55.56%), Query Frame = 2
Query:  191 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARMFTENKREYNREIR 616
            MS+P+++R M   K +  D              + +N    GP D+ + GG +K+ ++  + YP K P+V F+++++HPN+    GS+CLD++   WSP++D+  +  T +  LL  PNP+ P N EAA +   ++  Y + ++
Sbjct:    1 MSSPSKRREMDMMKLMMSDYKVETINDGMQEFYVEFN----GPKDSLYQGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVK 140          
The following BLAST results are available for this feature:
BLAST of EY744411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UBC16_SCHPO2.226e-1835.71Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UBE2H_MOUSE2.907e-1838.46Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN2.907e-1838.46Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN2.907e-1838.46Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBC6_ARATH3.797e-1829.86Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
UBC21_CAEEL3.797e-1833.99Probable ubiquitin-conjugating enzyme E2 21 OS=Cae... [more]
UBE2U_HUMAN6.477e-1835.04Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBC4_WHEAT6.477e-1831.25Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBC12_DICDI8.459e-1827.97NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UBC4_ARATH1.105e-1730.56Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-008-C11-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744411 ID=EY744411; Name=EY744411; organism=Citrus sinensis; type=EST; length=920bp
AATTGGGACCGCTGACCTGAACGACTCTCTCTCTCTCTCTCTTTTGTTTC
TCTGATCAAATTGAGTACCATGGAATTCTTTCTCTGATACCGCCTGCTTT
TCGATTGTTTCCCGAGAAAAATCTCGCTGCGATTCTGAAGCTTTTACTGC
AATCAACGCTACTTGCCGCGTCAGCTCGTAGGCAGTGAGAATGTCGACTC
CTGCAAGGAAGAGATTGATGAGGGATTTTAAGAGGTTACAACAAGATCCT
CCGGCTGGCATTAGTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAA
TGCTGTTATATTCGGGCCGGATGACACCCCATGGGATGGAGGTACGTTTA
AATTGACACTTCAGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTG
CGCTTTGTTTCTCGGATGTTCCATCCAAATATTTATGCGGATGGAAGCAT
TTGCTTGGACATTCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAG
CAATACTCACGTCAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCT
CCTGCAAATTCGGAGGCCGCACGGATGTTTACCGAGAACAAGCGTGAATA
CAATAGGGAAATACGGGGAATTGGTGAGCAGAATTGGACTGCTGACTAAT
GGGGAACTTGTTGGAATGGAGGGAACTTCCAAAAAAATCCAATGGGCTGG
TCTAAATAACATTTAAAATTTCAAAGGTGGGGGGGGGGAATACTTGAACT
GGTTTAATCGGTTGTTTCCCCCTTTAAAAGGGAGGATGCTTGGCCCCCTT
ATTTGCTTAATATTTTCACCCTCTTACGGCCAATTGTAACCCCCCCCACA
CAAAACCTGGTCGCAGTCGCTATTTCCATGGCCCGTGTGCGGGCTTTAAA
CAGGACGCCAACACAAAAAA
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