EY663231

Overview
NameEY663231
Unique NameEY663231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY663231 vs. ExPASy Swiss-Prot
Match: CDKF1_ORYSI (Cyclin-dependent kinase F-1 OS=Oryza sativa subsp. indica GN=CDKF-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 28/58 (48.28%), Postives = 43/58 (74.14%), Query Frame = 3 
Query:   60 SYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKV 233
            S + +R++RAPEL++G+T Y   +D+WS GC+LAEL   +P+FPG + +DQ+  II V
Sbjct:  292 SCVGTRWFRAPELLYGSTNYGQEVDLWSLGCILAELFNLEPIFPGTSDIDQIGRIISV 349
[Close]
BLAST of EY663231 vs. ExPASy Swiss-Prot
Match: CDKC3_ORYSJ (Cyclin-dependent kinase C-3 OS=Oryza sativa subsp. japonica GN=CDKC-1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 30/73 (41.10%), Postives = 46/73 (63.01%), Query Frame = 3 
Query:   15 DF*RAKQLIAGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVEIIKV 233
            DF  A+      +  +++ + +YR PEL+ GAT Y  ++DIWS GC+ AE LL +PLFPG    +QL +I ++
Sbjct:  179 DFGLARPFTRDGSFTNHVITLWYRPPELLLGATNYAEAVDIWSVGCIFAEFLLRKPLFPGRTEQEQLSKIFEL 251
The following BLAST results are available for this feature:
BLAST of EY663231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 272
Match NameE-valueIdentityDescription
CDKF1_ORYSI9.473e-1148.28Cyclin-dependent kinase F-1 OS=Oryza sativa subsp.... [more]
CDKC3_ORYSJ9.473e-1141.10Cyclin-dependent kinase C-3 OS=Oryza sativa subsp.... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-052-H11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY663231 ID=EY663231; Name=EY663231; organism=Citrus sinensis; type=EST; length=885bp
CCACGCGTCCGTGTGATTTTTGACGTGCAAAACAGCTGATTGCTGGAGAA
GCAAACATATCATACATATGTTCACGTTTCTATCGGGCTCCAGAACTTAT
ATTTGGAGCTACAGAATATACAACCTCAATTGATATATGGTCAGCTGGTT
GTGTGCTTGCCGAGCTTCTTTTGGGCCAGCCATTATTTCCTGGAGAAAAT
GCAGTGGACCAGCTTGTAGAGATTATCAAGGTACAGTTTGCCCTCAAATT
TTTGAAATGATGCAATTTTCATGATCACTCGTCACATGCTGCTTTTGCTT
CTGTAGGTTCTCGGTACACCCACTCGTGAAGAAATTCGCTGTATGAATCC
AAATTATACCGATTTTAGGTTTCCACAGATTAAAGCACATCCTTGGCACA
AGGTTTTCCACAAACGGATGCCTCCTGAGGCTATTGATCTTGCTTCACGC
CTGTTGCAGTATTCACCAAGTCTCCGATGTACAGCGCTAGAAGCATGTGC
ACATCCTTTCTTTGATGAACTGCGTGAGCCAAATGCTCGCCTACCAAATG
GCCGCCCACTGCCACCTCTCTTCAACTATAAACAGGAATTATCGGGGGCT
TCACCATAGCTTGTTAATAAGTTGATACCCAGACCATGTGAAACGGCAAT
TAGGTCTGAATTTCTTGCATCCAGCCGGGACATACGTCTAGACAAGTAAT
ATAGAAGTGAAATCTACTCGGTGATGTGTAACACAAACGGCATTATATCC
TTGTATCGAACTGCCATGCATTGAGGCCTTATCACCATCCAGTGTTGCTC
GATCAGCAAGCCTACTTTCTCAGGCAGCTATGCTGTTCTTGGGGCCCTCT
TTTTCTGCTGTTCATCCTCCGGTGTCTCCTCCCAC
back to top