EY744395

Overview
NameEY744395
Unique NameEY744395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length955
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744395 vs. ExPASy Swiss-Prot
Match: ATPD_NEUCR (ATP synthase subunit delta, mitochondrial OS=Neurospora crassa GN=atp-16 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 8.713e-13
Identity = 40/111 (36.04%), Postives = 66/111 (59.46%), Query Frame = 1
Query:  247 SIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSV-HDGNDTKKYFVSSGFAFIHANSVADIIAVEAVPLDQIDPSLVQKGLAEFNQKLIS 576
            ++  K+ ++  LP+ +   +++V  V +PA +G+MGVL  HVP+I +LKPG++ V  +    K+YF+S GFA +   S   I AVE   L+      V+  +AE  QK++S
Sbjct:   30 AVADKIKLSLSLPHQAIYKSQDVVQVNIPAVSGEMGVLANHVPSIEQLKPGLVEVIEESGSNKQYFLSGGFAVVQPGSKLSINAVEGYALEDFSAEAVRAQIAE-AQKIVS 139          
BLAST of EY744395 vs. ExPASy Swiss-Prot
Match: ATPD_HUMAN (ATP synthase subunit delta, mitochondrial OS=Homo sapiens GN=ATP5D PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.941e-12
Identity = 39/113 (34.51%), Postives = 61/113 (53.98%), Query Frame = 1
Query:  253 PSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPLDQIDPSLVQKGLAEFNQKLISATTD 588
            P++++  F  P     +   V  V VP  TG  G+L  HVPT+  L+PG++ VH +   T KYFVSSG   ++A+S   ++A EAV LD +D    +  L +   +L+    +
Sbjct:   35 PNQMSFTFASPTQVFFNGANVRQVDVPTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQAELVGTADE 147          
BLAST of EY744395 vs. ExPASy Swiss-Prot
Match: ATPD_RAT (ATP synthase subunit delta, mitochondrial OS=Rattus norvegicus GN=Atp5d PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.535e-12
Identity = 40/117 (34.19%), Postives = 60/117 (51.28%), Query Frame = 1
Query:  241 PTSIPSKLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVH-DGNDTKKYFVSSGFAFIHANSVADIIAVEAVPLDQIDPSLVQKGLAEFNQKLISATTD 588
            P + P +++  F  P         V  V VP  TG  G+L  HVPT+  L+PG++ VH +   T KYFVSSG   ++A+S   ++A E V LD +D    +  L +   +L  A  +
Sbjct:   31 PAAGPGQMSFTFASPTQVFFDGANVRQVDVPTLTGAFGILASHVPTLQVLRPGLVMVHAEDGTTTKYFVSSGSVTVNADSSVQLLAEEVVTLDMLDLGAARANLEKAQSELSGAADE 147          
BLAST of EY744395 vs. ExPASy Swiss-Prot
Match: ATPD_SCHPO (ATP synthase subunit delta, mitochondrial OS=Schizosaccharomyces pombe GN=atp16 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.643e-11
Identity = 43/106 (40.57%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  259 KLTVNFVLPYASELSAKEVDMVIVPASTGQMGVLPGHVPTIAELKPGVLSVHDGNDTK-KYFVSSGFAFIHANSVADIIAVEAVPLDQIDPS----LVQKGLAEFN 561
            KL ++  LPY +      V  V +PA  G+MG+L  HVP I  LKPGV+SV D +  K KYF+S GFA    ++   I   EA  L+    S    L++K  AE N
Sbjct:   30 KLVLSMALPYQTIYEKVPVTQVDIPAEDGEMGILKDHVPMIQCLKPGVISVTDESSNKSKYFISGGFAVQQPSNELSITVPEAYKLEDFSSSVANQLLEKHKAEMN 135          
The following BLAST results are available for this feature:
BLAST of EY744395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ATPD_NEUCR8.713e-1336.04ATP synthase subunit delta, mitochondrial OS=Neuro... [more]
ATPD_HUMAN1.941e-1234.51ATP synthase subunit delta, mitochondrial OS=Homo ... [more]
ATPD_RAT2.535e-1234.19ATP synthase subunit delta, mitochondrial OS=Rattu... [more]
ATPD_SCHPO1.643e-1140.57ATP synthase subunit delta, mitochondrial OS=Schiz... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-008-B07-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744395 ID=EY744395; Name=EY744395; organism=Citrus sinensis; type=EST; length=955bp
CCACGCGTCCGCAAACCAAACACTTCCAAAAGCTAATCAACGCTCTCGCC
GAAAATGTTCCGGCAAGCTTCACGCCTCTTGGCTCGAGCCAGCGCGGTGA
CAAGGTCTCGCGCCTTCTCATCGGAGGTCCCAGCCACGCCCGCCGTTGAT
TCGACTTTCGTTGAGTCATGGAAGAAAGTGAATCCAATCATGGAGCCGCC
AAAGACTCCATCGGTTTACATGACCCCTCGCCCACAAACCCCCACTTCAA
TCCCCTCCAAGCTCACCGTCAACTTCGTCCTTCCCTACGCCTCTGAGCTC
TCCGCTAAGGAGGTCGATATGGTTATAGTTCCAGCATCAACTGGGCAAAT
GGGTGTTCTGCCTGGACATGTACCTACAATTGCAGAACTAAAGCCTGGAG
TCTTATCGGTTCATGATGGTAATGATACCAAGAAATACTTTGTTAGCAGT
GGGTTTGCATTTATCCATGCAAACTCTGTTGCAGACATAATCGCTGTTGA
GGCTGTGCCACTCGACCAAATTGACCCCAGCTTGGTCCAGAAGGGCCTTG
CAGAGTTCAACCAGAAGCTTATTTCAGCTACAACTGACCCTGGAGAAAGT
TGAAGCTCAGATAGGGGGTGAATGGTTCAAGGGGAACTCAACTCTGCATC
TAACGGGGTAATTTTCTTCTAACTTCCAATTTTTCTCCATTTTGCTTTTT
TATTATTGAGTTGGTTTTGGGGGTTTTTCNCCCCTCCCAGGGACCTCTNC
AAGGGTCCATAGGATTTGTGGAAAAATAGTTTTTCACGGCTTTTTCCCCG
AAGACGACAAAAACACCATACCGAAAAAGAGAGGAACCCCGCTCTAGCGA
TTTATATTCAAGAAAATTGGATGGCGGGAGGGGAAAATTAGGCCGAAAAT
TGCGTCTTTCGGGCGCCCGCGGAGTAACTAGAAATGGCGAGACAACATTC
CTCAC
back to top