EY744393

Overview
NameEY744393
Unique NameEY744393
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744393 vs. ExPASy Swiss-Prot
Match: PEL_BACSU (Pectate lyase OS=Bacillus subtilis GN=pel PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.472e-12
Identity = 48/156 (30.77%), Postives = 70/156 (44.87%), Query Frame = 2
Query:    2 GGRGHDVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRC-IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRN------------WGIYAVCASVESQIYSQCNIYE 379
            G      D I I   + HIWID C+  D                 + DG  D +  +  IT+S  Y+  HDK+ + G+  S   D   +++T+HH  +    QR PR+RFG+VH+YNNY               WGI        S+IY+Q N+ +
Sbjct:  198 GNWNSQYDNITINGGT-HIWIDHCTFNDGSRPDSTSPKYYGRKYQHHDGQTDASNGANYITMSYNYYHDHDKSSIFGSSDSKTSDDGKLKITLHHNRYKNIVQRAPRVRFGQVHVYNNYYEGSTSSSSYPFSYAWGI-----GKSSKIYAQNNVID 347          
BLAST of EY744393 vs. ExPASy Swiss-Prot
Match: PEL_PSEMA (Pectate lyase OS=Pseudomonas marginalis GN=pel PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.229e-12
Identity = 47/175 (26.86%), Postives = 81/175 (46.29%), Query Frame = 2
Query:    2 GGRGHDVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHV-GDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGD 472
            G    + DG+ ++  + ++W+D  +  D                 + DG +D+   +  +T+S   F  H+K  LIG+  S    D  ++VTIH+ LF+    R PR+R+G+VHLYNNY           S   ++Y     +  G+  + F   +E+ A ++   SG  +  GD
Sbjct:  163 GNWNSEYDGLTVE-GANNVWVDHVTFTDGRRTDDQNGTEHERPKQHHDGALDVKNGANFVTISYSVFKSHEKNNLIGSSDSRTTDDGKLKVTIHNTLFENISARAPRVRYGQVHLYNNYH--------VGSTSHKVYPFSYAHGVGKNSKIF---SERNAFEIAGISGCDKIAGD 325          
BLAST of EY744393 vs. ExPASy Swiss-Prot
Match: PELB_COLGL (Pectate lyase B OS=Colletotrichum gloeosporioides GN=PLB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.602e-11
Identity = 43/137 (31.39%), Postives = 69/137 (50.36%), Query Frame = 2
Query:   23 DGIQIKPNSRHIWIDRCSL--------RDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRC--IRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTF 403
            D I I+ +S+ +W+D C L        +DY DGL+DIT  S  +TVS  Y   H K  L+G   S+  +    + VT  +  +     R+P +RFG VH++NNY        V   + +Q+  + +++   +K  TF
Sbjct:  139 DRIGIQASSK-VWVDHCDLSSDKKNNGKDYYDGLLDITHASMAVTVSNTYIHDHYKGSLVGHSDSNSAEDTGKLYVTYANNHWYNVASRNPSVRFGNVHIFNNYAEKLETSGVNTRMGAQLLIESSVFSDTKKAVTF 274          
BLAST of EY744393 vs. ExPASy Swiss-Prot
Match: PELE_DICD3 (Pectate lyase E OS=Dickeya dadantii (strain 3937) GN=pelE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.093e-11
Identity = 53/181 (29.28%), Postives = 78/181 (43.09%), Query Frame = 2
Query:   53 HIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRC--IRVTIHHCLFDGTRQRHPRLRFGKVHLYNN------------YTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQL 502
            H+W+D  ++ D                   DG +DI R S  +TVS   F  HDKT+LIG   ++       +RVT H+ LFD   +R PR+RFG VH YNN            Y  ++GI          + S+ N +     K+      +K    ++A +G I S+    + GA   L
Sbjct:  191 HVWVDHVTISDGSLTDDKYTTKNGEKYVQHDGSLDIKRGSDYVTVSNSRFELHDKTILIGHSDNNGSQDAGKLRVTFHNNLFDRVGERTPRVRFGSVHAYNNVYVGDVNHKAYRYQYSFGI-----GTSGSLLSESNAFTIDNMKKISG--RDKECSVVKAFNGKIFSDKGSIINGASYNL 364          
BLAST of EY744393 vs. ExPASy Swiss-Prot
Match: PELE2_ERWCH (Pectate lyase E OS=Erwinia chrysanthemi GN=pelE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.093e-11
Identity = 53/181 (29.28%), Postives = 78/181 (43.09%), Query Frame = 2
Query:   53 HIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRC--IRVTIHHCLFDGTRQRHPRLRFGKVHLYNN------------YTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKAADKLEAKSGLIRSEGDIFLKGAQAQL 502
            H+W+D  ++ D                   DG +DI R S  +TVS   F  HDKT+LIG   ++       +RVT H+ LFD   +R PR+RFG VH YNN            Y  ++GI          + S+ N +     K+      +K    ++A +G I S+    + GA   L
Sbjct:  191 HVWVDHVTISDGSFTDDKYTTKNGEKYVQHDGSLDIKRGSDYVTVSNSRFELHDKTILIGHSDNNGSQDAGKLRVTFHNNLFDRVGERTPRVRFGSVHAYNNVYVGDVNHKAYRYQYSFGI-----GTSGSLLSESNAFTIDNMKKISG--RDKECSVVKAFNGKIFSDKGSIINGASYNL 364          
BLAST of EY744393 vs. ExPASy Swiss-Prot
Match: PELA_DICD3 (Pectate lyase A OS=Dickeya dadantii (strain 3937) GN=pelA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.093e-11
Identity = 38/112 (33.93%), Postives = 60/112 (53.57%), Query Frame = 2
Query:   23 DGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIG-ADPSHVGDR-CIRVTIHHCLFDGTRQRHPRLRFGKVHLYNN 301
            DG+ I   + H+W+D  ++ D                   DG +DI R S  +T+S   F QHDKTMLIG +D +   D+  + VT+ + +F+   +R PR+R+G +H +NN
Sbjct:  175 DGMNITNGAHHVWVDHVTISDGSFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLFDQHDKTMLIGHSDTNSAQDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNN 286          
BLAST of EY744393 vs. ExPASy Swiss-Prot
Match: PEL_XANCM (Pectate lyase OS=Xanthomonas campestris pv. malvacearum PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.733e-11
Identity = 45/152 (29.61%), Postives = 76/152 (50.00%), Query Frame = 2
Query:    2 GGRGHDVDGIQIKPNSRHIWIDRCSLRD-----------------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPS--HVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNY----TRNWGI---YAVCASVESQIYSQCNIYE 379
            G    + DG+ ++  + ++W+D  +  D                 + DG +D+ + +  +T+S   F  H+K  LIG+  S        ++VTIH+ LF+    R PR+RFG+VHLYNNY    T N      +A     ES+I+S+ N+++
Sbjct:  159 GNWNSEYDGLTVE-GATNVWVDHVTFTDGRRTDDQNGTANGRPKQHHDGAMDVKKGANFVTISYSAFKSHEKNDLIGSSDSASSTDSGKLKVTIHNTLFENISARAPRVRFGQVHLYNNYHVGSTSNKVYPFSHAHGVGKESKIFSERNVFD 309          
The following BLAST results are available for this feature:
BLAST of EY744393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PEL_BACSU2.472e-1230.77Pectate lyase OS=Bacillus subtilis GN=pel PE=1 SV=... [more]
PEL_PSEMA3.229e-1226.86Pectate lyase OS=Pseudomonas marginalis GN=pel PE=... [more]
PELB_COLGL1.602e-1131.39Pectate lyase B OS=Colletotrichum gloeosporioides ... [more]
PELE_DICD32.093e-1129.28Pectate lyase E OS=Dickeya dadantii (strain 3937) ... [more]
PELE2_ERWCH2.093e-1129.28Pectate lyase E OS=Erwinia chrysanthemi GN=pelE PE... [more]
PELA_DICD32.093e-1133.93Pectate lyase A OS=Dickeya dadantii (strain 3937) ... [more]
PEL_XANCM2.733e-1129.61Pectate lyase OS=Xanthomonas campestris pv. malvac... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-008-B05-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744393 ID=EY744393; Name=EY744393; organism=Citrus sinensis; type=EST; length=940bp
AGGTGGTAGAGGACATGATGTTGATGGCATTCAAATTAAGCCGAATTCTA
GGCACATATGGATAGATCGGTGCAGCCTTCGTGATTATGATGATGGACTT
ATTGACATTACCAGGCAAAGCACAGATATTACTGTTTCTAGATGTTACTT
CACACAACATGACAAGACAATGCTTATTGGAGCAGACCCTTCTCATGTCG
GAGATAGATGCATCCGAGTTACCATTCACCATTGTCTTTTTGATGGGACA
CGCCAAAGACATCCACGCCTTAGATTTGGGAAGGTTCACCTGTACAATAA
TTACACTAGGAACTGGGGCATTTATGCTGTTTGTGCAAGTGTGGAATCCC
AGATATACTCCCAATGCAATATATATGAAGCAGGACAAAAGAAAAGGACT
TTTGAATATTATACAGAGAAGGCAGCGGACAAGCTTGAGGCAAAGTCTGG
CTTGATACGATCAGAAGGAGACATATTCCTGAAAGGAGCACAAGCACAAT
TATTGACAGGGGTAGGGGAAGAATGTGTATTCCATCCGAGTGAATACTAT
CCAACGTGGACTATGGAAGCACCCTCAGACTCTCTTAAACAAATTCTCCA
AATCTGTACAGGCTGGCAATCGATTCCTAGACCAGCAGATGTGATGATAG
CTAATTACCTTTTCAATATCTTCATTGTGCCCCCTGCATGCATGATGAAT
AATATATGTCCCTGCTTTGGTGCTTTTATTTTTCCCCCAGAAAAAGGGGG
AAAAAAAAAAAAAAAAAATTTGGAATTTCCAGGGGTTAAATTGGGGTTGC
CCCCTTTGGGGTAAAAAAAATTCCTTTCCCTTGGGCCCAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAGGGGGGGGCCCCCCCCAAAAAAGGAAAACAC
AATCTTTAATGATACCCGGGGGGGTGGGGGAAAGATATTA
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