EY663124

Overview
NameEY663124
Unique NameEY663124
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP_NEIMF (Glycine dehydrogenase [decarboxylating] OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=gcvP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.677e-11
Identity = 33/47 (70.21%), Postives = 40/47 (85.11%), Query Frame = 2 
Query:    5 ASERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQ 145
            A +R  P +I+GVS D+SGKPALR+A+ TREQHIR +KATSNICTAQ
Sbjct:  286 AFKRSAPGRIIGVSKDASGKPALRMALSTREQHIRREKATSNICTAQ 332
[Close]
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP_MYCPA (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium paratuberculosis GN=gcvP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.677e-11
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 2 
Query:    2 HASE-RMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQV 148
            HA+  R +P ++VGVS+D+ G PA R+A+ TREQHIR DKATSNICTAQV
Sbjct:  290 HANHARQLPGRLVGVSLDADGSPAYRLALQTREQHIRRDKATSNICTAQV 339
[Close]
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP_MYCA1 (Glycine dehydrogenase [decarboxylating] OS=Mycobacterium avium (strain 104) GN=gcvP PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.677e-11
Identity = 33/50 (66.00%), Postives = 41/50 (82.00%), Query Frame = 2 
Query:    2 HASE-RMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQV 148
            HA+  R +P ++VGVS+D+ G PA R+A+ TREQHIR DKATSNICTAQV
Sbjct:  290 HANHARQLPGRLVGVSLDADGSPAYRLALQTREQHIRRDKATSNICTAQV 339
[Close]
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP_XYLFT (Glycine dehydrogenase [decarboxylating] OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=gcvP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.497e-11
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 2 
Query:   11 ERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQV------TYYCYS*SVSGLL---WRT 196
            +R IP +++GVS+D++G PA R+A+ TREQHIR +KATSNICTAQV      + Y       GLL   WRT
Sbjct:  308 KRSIPGRLIGVSVDAAGHPAYRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPQGLLRIAWRT 378
[Close]
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP_XYLFA (Glycine dehydrogenase [decarboxylating] OS=Xylella fastidiosa GN=gcvP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.497e-11
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 2 
Query:   11 ERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQV------TYYCYS*SVSGLL---WRT 196
            +R IP +++GVS+D++G PA R+A+ TREQHIR +KATSNICTAQV      + Y       GLL   WRT
Sbjct:  308 KRSIPGRLIGVSVDAAGHPAYRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPQGLLRIAWRT 378
[Close]
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP_RHOPA (Glycine dehydrogenase [decarboxylating] OS=Rhodopseudomonas palustris GN=gcvP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.497e-11
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 2 
Query:   11 ERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQV 148
            +R +P +IVG+SIDS G+PA R+A+ TREQHIR +KATSNICTAQV
Sbjct:  314 KRSLPGRIVGLSIDSHGQPAYRLALQTREQHIRREKATSNICTAQV 359
[Close]
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP_NITHX (Glycine dehydrogenase [decarboxylating] OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=gcvP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.497e-11
Identity = 31/46 (67.39%), Postives = 40/46 (86.96%), Query Frame = 2 
Query:   11 ERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQV 148
            +R++P +IVG+S+DS G PA R+A+ TREQHIR +KATSNICTAQV
Sbjct:  294 KRLLPGRIVGLSVDSRGAPAYRLALQTREQHIRREKATSNICTAQV 339
[Close]
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP_SYNS9 (Glycine dehydrogenase [decarboxylating] OS=Synechococcus sp. (strain CC9902) GN=gcvP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.567e-11
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 2 
Query:    5 ASERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQV 148
            A +R IP ++VG S D+ G PALR+A+ TREQHIR DKATSNICTAQV
Sbjct:  285 AYKRQIPGRLVGESKDAEGNPALRLALQTREQHIRRDKATSNICTAQV 332
[Close]
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP_NEIMA (Glycine dehydrogenase [decarboxylating] OS=Neisseria meningitidis serogroup A GN=gcvP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.567e-11
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 2 
Query:   11 ERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQ 145
            +R  P +I+GVS D+SGKPALR+A+ TREQHIR +KATSNICTAQ
Sbjct:  288 KRSAPGRIIGVSKDASGKPALRMALSTREQHIRREKATSNICTAQ 332
[Close]
BLAST of EY663124 vs. ExPASy Swiss-Prot
Match: GCSP_NEIM0 (Glycine dehydrogenase [decarboxylating] OS=Neisseria meningitidis serogroup C (strain 053442) GN=gcvP PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.567e-11
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 2 
Query:   11 ERMIPSKIVGVSIDSSGKPALRVAMLTREQHIRMDKATSNICTAQ 145
            +R  P +I+GVS D+SGKPALR+A+ TREQHIR +KATSNICTAQ
Sbjct:  288 KRSAPGRIIGVSKDASGKPALRMALSTREQHIRREKATSNICTAQ 332
The following BLAST results are available for this feature:
BLAST of EY663124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
GCSP_NEIMF2.677e-1170.21Glycine dehydrogenase [decarboxylating] OS=Neisser... [more]
GCSP_MYCPA2.677e-1166.00Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_MYCA12.677e-1166.00Glycine dehydrogenase [decarboxylating] OS=Mycobac... [more]
GCSP_XYLFT3.497e-1152.11Glycine dehydrogenase [decarboxylating] OS=Xylella... [more]
GCSP_XYLFA3.497e-1152.11Glycine dehydrogenase [decarboxylating] OS=Xylella... [more]
GCSP_RHOPA3.497e-1169.57Glycine dehydrogenase [decarboxylating] OS=Rhodops... [more]
GCSP_NITHX3.497e-1167.39Glycine dehydrogenase [decarboxylating] OS=Nitroba... [more]
GCSP_SYNS94.567e-1168.75Glycine dehydrogenase [decarboxylating] OS=Synecho... [more]
GCSP_NEIMA4.567e-1171.11Glycine dehydrogenase [decarboxylating] OS=Neisser... [more]
GCSP_NEIM04.567e-1171.11Glycine dehydrogenase [decarboxylating] OS=Neisser... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-051-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY663124 ID=EY663124; Name=EY663124; organism=Citrus sinensis; type=EST; length=928bp
CCACGCGTCCGAGAGGATGATTCCCTCGAAGATTGTTGGTGTTAGTATTG
ATTCTTCAGGGAAGCCTGCCCTGCGTGTGGCTATGCTGACTAGGGAGCAG
CATATCCGCATGGACAAGGCTACCAGCAACATCTGCACCGCTCAAGTAAC
ATATTATTGTTATTCCTGATCTGTTTCTGGTTTACTTTGGAGGACTGCCT
GTGTAGAGATTGAAAAACTGCTTTCTAATTTTTTGAAAGTTTGAAGACTG
CACAACCTGTCTAGCTCAACAATTTTGTCATAAACACATGCATTCATATT
TTCTGCACCATAAAACATGCCCAATGAACTGACTTTGCTTTGGGTGAATA
AAACTTATCTATGTAGGCATTACTTGCAAACATGGCTGCTATGCATGCTG
TTTATCACGGACCTGAAGGCCTTAAAACCATTGCTCAAAGAGGCCATGGA
CTACCCGGGACTTTCGCCCTTGGGTTAAAAAAGCTGGTGACAGTGGAAGT
CCAGAGGCTTCACTTCTTTGACACTGTGAAGGTGAAGTGTGCGGATGCAC
ATGCCATTGCCAGTGCTGCTTACAAGATTCGAATGAAATCTCAGGATGTA
GATTCCAACACCGTCACTGCTTTCTTTGATGACACACCACCTTGGACGAT
GCTCGATAGCTTTTCATAAGTCTCACGAGGAGCAAATCAGTTCCATTCTC
TGCTGCATCTCTGGCTGAAGAGGGTGAGACTGCAATTTCGTCTGGATTAA
CGAGGAGAGTACGTATCTGACACATCCTGTTTTTAACAACTACCCCACGA
GCGTGAGTTGCTCAGATGCATCAACTGNTGCTATCATATGACTCTCCCTA
TGCCTTAGTATACTCCCTTGGGGTCTTGGTACATGGACTGAATGCAACAC
CGAATTGATACCATGACATGCCTACCTT
back to top