EY662823

Overview
NameEY662823
Unique NameEY662823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length899
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY662823 vs. ExPASy Swiss-Prot
Match: DOF17_ARATH (Dof zinc finger protein DOF1.7 OS=Arabidopsis thaliana GN=DOF1.7 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.020e-20
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 1
Query:  292 LPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRK-NKNCAS 465
            L CPRC+S +TKFCYYNNYN++QPRHFCK C+RYWT GG +RN+PVG G RK NK   S
Sbjct:   33 LKCPRCDSPNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGTRKSNKRSGS 91          
BLAST of EY662823 vs. ExPASy Swiss-Prot
Match: DOF32_ARATH (Dof zinc finger protein DOF3.2 OS=Arabidopsis thaliana GN=DOF3.2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.945e-20
Identity = 37/62 (59.68%), Postives = 52/62 (83.87%), Query Frame = 1
Query:  280 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNCAS 465
            P++ L CPRC+S +TKFCYYNNY+++QPR+FCK+C+RYWT GG +RN+P+G   RK+K  +S
Sbjct:   36 PEQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPIGGAYRKHKRSSS 97          
BLAST of EY662823 vs. ExPASy Swiss-Prot
Match: DOF44_ARATH (Dof zinc finger protein DOF4.4 OS=Arabidopsis thaliana GN=DOF4.4 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.696e-19
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 1
Query:  235 NDASNSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNK 453
            N  +N ++Q   LK+P     CPRC+S +TKFC+YNNY+ +QPR+FCK C+RYWT GG +RN+PVG   RK K
Sbjct:    5 NVFANEDNQVNGLKRPPPSRVCPRCDSDNTKFCFYNNYSESQPRYFCKNCRRYWTHGGALRNIPVGGSCRKPK 77          
BLAST of EY662823 vs. ExPASy Swiss-Prot
Match: DOF35_ARATH (Dof zinc finger protein DOF3.5 OS=Arabidopsis thaliana GN=DOF3.5 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.439e-19
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1
Query:  298 CPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNK 453
            CPRC S +TKFCYYNNY++ QPR+FCK C+RYWT GG++RNVPVG G RK++
Sbjct:   27 CPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSR 78          
BLAST of EY662823 vs. ExPASy Swiss-Prot
Match: DOF12_ARATH (Dof zinc finger protein DOF1.2 OS=Arabidopsis thaliana GN=DOF1.2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.827e-18
Identity = 35/50 (70.00%), Postives = 44/50 (88.00%), Query Frame = 1
Query:  298 CPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRK 447
            CPRC S +TKFCYYNNY+++QPR+FCK C+RYWT GG++RN+PVG G RK
Sbjct:   40 CPRCASSNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNIPVGGGCRK 89          
BLAST of EY662823 vs. ExPASy Swiss-Prot
Match: DOF43_ARATH (Dof zinc finger protein DOF4.3 OS=Arabidopsis thaliana GN=DOF4.3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.698e-16
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  235 NDASNSNSQEKTLKKPDKI-LPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNCASQ 468
            N  +N ++Q   +K P      C RC+S +TKFCYYNNY+  QPR+FCK C+RYWT GG +RNVP+G   R  +   +Q
Sbjct:    5 NVVANEDNQVNDVKPPPPPPRVCARCDSDNTKFCYYNNYSEFQPRYFCKNCRRYWTHGGALRNVPIGGSSRAKRTRINQ 83          
BLAST of EY662823 vs. ExPASy Swiss-Prot
Match: DOF45_ARATH (Dof zinc finger protein DOF4.5 OS=Arabidopsis thaliana GN=DOF4.5 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.517e-15
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  235 NDASNSNSQEKTLKKPDKI-LPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNCASQ 468
            N  +N ++Q   +K P      C RC+S +TKFCYYNNY   QPR+FCK C+RYWT GG +RN+P+G   R  +   +Q
Sbjct:    5 NVFANEDNQVNDVKPPPPPPRVCARCDSDNTKFCYYNNYCEFQPRYFCKNCRRYWTHGGALRNIPIGGSSRAKRARVNQ 83          
The following BLAST results are available for this feature:
BLAST of EY662823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DOF17_ARATH3.020e-2069.49Dof zinc finger protein DOF1.7 OS=Arabidopsis thal... [more]
DOF32_ARATH3.945e-2059.68Dof zinc finger protein DOF3.2 OS=Arabidopsis thal... [more]
DOF44_ARATH5.696e-1954.79Dof zinc finger protein DOF4.4 OS=Arabidopsis thal... [more]
DOF35_ARATH7.439e-1969.23Dof zinc finger protein DOF3.5 OS=Arabidopsis thal... [more]
DOF12_ARATH2.827e-1870.00Dof zinc finger protein DOF1.2 OS=Arabidopsis thal... [more]
DOF43_ARATH7.698e-1648.10Dof zinc finger protein DOF4.3 OS=Arabidopsis thal... [more]
DOF45_ARATH6.517e-1546.84Dof zinc finger protein DOF4.5 OS=Arabidopsis thal... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-048-D10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662823 ID=EY662823; Name=EY662823; organism=Citrus sinensis; type=EST; length=899bp
TGCGTAACCCACNGCGTCCGCATAGAAGCTTAGCGAAGAAAAAACANNGA
GGAGGATTCTTCAGCAGTAAAGGCCGCTNGAGACTACACTTTCAAGACCG
ATACTACACCGTCCAAATATAGAATGAGTCAAAANATTCCTGAATCGCCA
GAGGCTAATGGTGAACCCCAAAACACCTNTCAATAGATGNATGAAACTGC
AAAATCAAAGGCTGCTAAGTCTGAGAAATCCCAGAATGATGCTTCAAATT
CAAACTCACAAGAAAAGACCCTCAAGAAGCCAGATAAAATCCTTCCCTGC
CCTCGTTGCAATAGCATGGACACCAAATTCTGCTATTACAACAATTACAA
TATTAACCAACCCCGCCATTTTTGCAAAGCTTGTCAAAGATATTGGACTG
CTGGGGGTACCATGAGAAATGTGCCGGTGGGTGCTGGCCGTCGCAAGAAC
AAGAACTGTGCCTCACAATATCGTCACATCACCATCTCTGAGGCTCTGCA
AGCAGCTAGAATTGATGCTCCAAATGGGATAAGCCACCCCAGTGTGAAAA
GCAATGGCAGAGTCCTCAGCTTTGGCCTAGATGCTCCTATCTGTGACTCC
ATGGCTTCTGTATTGAATCTTGCAGAAGAAAAGGTTTTGAATGGTACCCA
AAATGGTTTTCATGGTTTTCAAGAACAAGAAATTCCCGTTCCCCTGCAGA
GGTGGGGGAAAATGGTGATGACTGCTCAAGTGGGTCTTCTATAACGGTCT
CCAATCCTATGGAAGAAGTTGGTAAAAACCGTTTGCAGGAACCCTTTCTG
CGGAACATTTAGGGCTTCCCCTTCCCGATTCCATGCTCCTCCGGCGTTCC
TGGTCCTCCACCGGGGAATGGTTCGCCCCTCCCACCCCTCCTGCCTTCA
back to top