EY662745

Overview
NameEY662745
Unique NameEY662745
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4072 contig Csv1_Contig4072:656..1095. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 6.029e-17
Identity = 41/58 (70.69%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 186
            R+W + NVS  VA S RIIYGGS  G  CKELA+Q D+DGFLVGGASLKPEFIDII +
Sbjct:  189 RQWLKTNVSEAVANSVRIIYGGSVTGGTCKELASQKDLDGFLVGGASLKPEFIDIINA 246          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.874e-17
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 186
            R W + NVS +VA  TRI+YGGS N  NCK+LA + D+DGFLVGGASLKPEF+DII +
Sbjct:  189 RSWLKQNVSDKVAEETRILYGGSVNAKNCKDLAKEQDIDGFLVGGASLKPEFVDIINA 246          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.343e-16
Identity = 45/64 (70.31%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 201
            R W + NVS EVA+ TRIIYGGS NG N   LAAQ DVDGFLVGGASLK PEF  II S T KK
Sbjct:  191 RDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGFLVGGASLKGPEFATIINSVTAKK 254          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.754e-16
Identity = 41/58 (70.69%), Postives = 44/58 (75.86%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 186
            RKWF+ N  + V    RIIYGGS   ANCKELA Q DVDGFLVGGASLKPEFIDI K+
Sbjct:  193 RKWFKTNTPSGVDQQIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLKPEFIDICKA 250          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.754e-16
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 186
            RKW +D +SAE A +TRIIYGGS +  NCK+LA + D+DGFLVGGASLKP F+DI+ +
Sbjct:  190 RKWLKDAISAEAAENTRIIYGGSVSEKNCKDLAKEADIDGFLVGGASLKPAFVDIVNA 247          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.754e-16
Identity = 42/64 (65.62%), Postives = 49/64 (76.56%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 201
            R+W + NVSAEVA+ TRIIYGGS NG N  ELA + D+DGFLVGGASLK PEF  I+ + T KK
Sbjct:  248 REWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNAVTSKK 311          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 83.9593 bits (206), Expect = 2.992e-16
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 186
            R W + +V   VA STRIIYGGS  GA CKELA+QPDVDGF V GASLKPEF+DII +
Sbjct:  190 RGWLKTHVPEAVAHSTRIIYGGSVTGATCKELASQPDVDGFRVSGASLKPEFVDIINA 247          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 2.992e-16
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 186
            RKW  + +S E A + R+IYGGS    NC++LAAQPDVDGFLVGGASLKP F+DII +
Sbjct:  190 RKWLNEKISPEAAENIRVIYGGSVTENNCRDLAAQPDVDGFLVGGASLKPAFVDIINA 247          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.992e-16
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 186
            R W  +NVS +VAASTRI+YGGS + ANC+ LA QP++DGFLVGGAS+KP F++I+ S
Sbjct:  184 RAWLANNVSPQVAASTRILYGGSVSPANCESLAKQPNIDGFLVGGASMKPTFLEIVDS 241          
BLAST of EY662745 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.665e-16
Identity = 42/64 (65.62%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   13 RKWFQDNVSAEVAASTRIIYGGSANGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSATVKK 201
            R W + NVS EVA+ TRIIYGGS NG N  ELA + D+DGFLVGGASLK PEF  I+ S T KK
Sbjct:  249 RGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSKK 312          
The following BLAST results are available for this feature:
BLAST of EY662745 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
TPISB_DANRE6.029e-1770.69Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIS_NEUCR7.874e-1765.52Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_STELP1.343e-1670.31Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIS_SCHJA1.754e-1670.69Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPIS_EMENI1.754e-1663.79Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIC_FRAAN1.754e-1665.63Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIS_PIG2.992e-1668.97Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]
TPIS_PARBA2.992e-1663.79Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIS_GRAVE2.992e-1663.79Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIC_ARATH6.665e-1665.63Triosephosphate isomerase, chloroplastic OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-047-E11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662745 ID=EY662745; Name=EY662745; organism=Citrus sinensis; type=EST; length=439bp
CCACGCGTCCGGAGGAAATGGTTTCAAGACAATGTCAGTGCTGAAGTTGC
AGCATCAACTAGAATCATCTACGGAGGTTCTGCAAATGGAGCAAATTGCA
AAGAATTGGCAGCACAACCTGATGTAGATGGATTTTTGGTTGGTGGAGCT
TCTCTAAAGCCGGAGTTCATCGATATTATCAAGTCTGCCACAGTGAAGAA
GAATTGAAGTTAAGACCAAGCTACTCGGCTTGCTGATGCCTGCAGTTTTC
TCTGTTATGCTTTCTGGAAACTAGCGTTGTAATTTTTGTGGTCTGTTAAG
TGTTACCAACGCCTTTCGAGTATAATAAGTTAAATTTTCAGAATTGTTAA
GAATCTCTTTCCTATTTCAGTGGGGATTTGAAACTTATCATTGTGGATTT
AATAAATGTTTGCTTTTCCCTTCTAAAAAAAAAAAAAAA
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