EY662711

Overview
NameEY662711
Unique NameEY662711
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7777 contig Csv1_Contig7777:1..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY662711 vs. ExPASy Swiss-Prot
Match: Y610_STAES (UPF0051 protein SE_0610 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_0610 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 46/195 (23.59%), Postives = 89/195 (45.64%), Query Frame = 3
Query:   75 NSVLDVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLVLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSF 659
            ++V+++++ K   VR++ +QN + N  ++             E V+ + G KL+    +   LG   +    S       Q QD  ++++   P      + K I  +  G+ ++ G V   R A+   +     +L+L+  +T +  P  ++  D++   H A +S + E QLFY  +RGI  E A + +V  F
Sbjct:  243 SAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVHENGNMEWVDGNLGSKLTMKYPNCVLLGEGAKGSTLSIAFASKGQVQDAGAKMIHKAPNTSSTIVSKSISKNG-GKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDNISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGF 436          
BLAST of EY662711 vs. ExPASy Swiss-Prot
Match: Y500_STAEQ (UPF0051 protein SERP0500 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0500 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 46/195 (23.59%), Postives = 89/195 (45.64%), Query Frame = 3
Query:   75 NSVLDVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLVLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSF 659
            ++V+++++ K   VR++ +QN + N  ++             E V+ + G KL+    +   LG   +    S       Q QD  ++++   P      + K I  +  G+ ++ G V   R A+   +     +L+L+  +T +  P  ++  D++   H A +S + E QLFY  +RGI  E A + +V  F
Sbjct:  243 SAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVHENGNMEWVDGNLGSKLTMKYPNCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNG-GKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDNISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGF 436          
BLAST of EY662711 vs. ExPASy Swiss-Prot
Match: Y2035_STAHJ (UPF0051 protein SH2035 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH2035 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 46/195 (23.59%), Postives = 89/195 (45.64%), Query Frame = 3
Query:   75 NSVLDVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGYELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLVLDHPRGYCRQLHKCIVAHSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSF 659
            ++V+++++ K   VR++ +QN + N  ++             E V+ + G KL+    +   LG   +    S       Q QD  ++++   P      + K I  +  G+ ++ G V   R A+   +     +L+L+  +T +  P  ++  D++   H A +S + E QLFY  +RGI  E A + +V  F
Sbjct:  243 SAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVHENGNMEWVDGNLGSKLTMKYPNCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNG-GKVIYRGIVHFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDNISLEHEAKVSKVSEEQLFYLMSRGISEEEATEMIVMGF 436          
BLAST of EY662711 vs. ExPASy Swiss-Prot
Match: AB8I_ARATH (UPF0051 protein ABCI8, chloroplastic OS=Arabidopsis thaliana GN=ABCI8 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 58/212 (27.36%), Postives = 92/212 (43.40%), Query Frame = 3
Query:   78 SVLDVVIGKGGKVRHSYLQNQSLNAAHIKWTAVRQETASGY--------ELVEVSTGGKLSRHNVHVQQLGPDTETELSSFHLLVSDQTQDLHSRLVLDHPRGYCRQLHKCIVA-HSLGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKALVFSFGAEVIERFP 686
            +V+++  GKG ++++S +QN        K       T  G            +V TG  ++     V   G D+  E  S  L  + Q  D  ++++        R + K I A HS  +  + G V+V   A+         S+L+  +A  N  P +Q+     K  H A+ S + E QLFYFQ RGID E A  A++  F  +V  + P
Sbjct:  328 AVVELYCGKGAEIKYSTVQNWYAGDEQGKGGIYNFVTKRGLCAGDRSKISWTQVETGSAITWKYPSVVLEGDDSVGEFYSVALTNNYQQADTGTKMIHKGKNTKSRIISKGISAGHS--RNCYRGLVQVQSKAEGAKNTSTCDSMLIGDKAAANTYPYIQVKNPSAKVEHEASTSKIGEDQLFYFQQRGIDHERALAAMISGFCRDVFNKLP 537          
The following BLAST results are available for this feature:
BLAST of EY662711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
Y610_STAES7.334e-1123.59UPF0051 protein SE_0610 OS=Staphylococcus epidermi... [more]
Y500_STAEQ9.579e-1123.59UPF0051 protein SERP0500 OS=Staphylococcus epiderm... [more]
Y2035_STAHJ9.579e-1123.59UPF0051 protein SH2035 OS=Staphylococcus haemolyti... [more]
AB8I_ARATH9.579e-1127.36UPF0051 protein ABCI8, chloroplastic OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-047-B11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662711 ID=EY662711; Name=EY662711; organism=Citrus sinensis; type=EST; length=892bp
TTCGTCGACCCACGCGTCCGGGTCGGTATATCGAAGAGTTCGTTGGCAAA
GAGGGTAATGACTGTTATTGGGCTAATTCAGTTTTGGACGTGGTGATTGG
AAAAGGGGGAAAGGTTAGGCATTCTTATTTGCAGAATCAGTCTTTGAATG
CCGCTCATATCAAGTGGACTGCTGTGAGGCAGGAAACAGCTAGTGGTTAT
GAGCTTGTAGAGGTAAGTACTGGTGGAAAATTGAGCAGGCACAATGTCCA
TGTTCAACAATTAGGCCCTGATACAGAGACAGAGTTATCTTCATTTCATT
TGTTGGTCTCTGATCAAACACAAGATCTTCATAGTAGGCTAGTGTTGGAC
CATCCACGAGGCTATTGTCGACAGCTTCACAAGTGTATTGTGGCTCATTC
GCTAGGACAAGCTGTTTTTGATGGGAACGTAAAGGTTAACAGATATGCAC
AGCAAACAGATGCTGGACAACTAACAAGAAGTCTCCTCCTTGAACCCCGT
GCAACTGTAAATGTCAAACCCAATCTTCAAATTATTGCCGACGATGTGAA
GTGCTCACACGGAGCTGCAATAAGTGATCTAGAAGAAAGCCAACTCTTTT
ACTTTCAGGCGCGGGGCATTGACTTAGAGACAGCAAGGAAAGCTCTTGTT
TTTTCATTTGGAGCTGAGGTGATCGAACGGTTTCCTTACCCTTCTATTCG
AAACCAAGTCGTGAGTCATGTCAAAAATTTGATGGGAACTACTGATGTTA
GTTTCTCCTAGTCAGGGTTTATAGATGGTGTGCATATTCTGTTTTTTGTG
TGCCCTACCCTTATATTATACCATCAATTTTATTTTTTTTTATATCAGAC
AAAAATAATATTGTTTAAAAAGAAAAAAAAAAAAAAGGGCGG
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