EY662311

Overview
NameEY662311
Unique NameEY662311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length901
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY662311_ssr92 microsatellite EY662311_ssr92:92..115. BLAST: Citrus ESTs to Prunus persica proteins V1
EY662311_ssr112 microsatellite EY662311_ssr112:112..123. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9730 contig Csv1_Contig9730:1..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY662311 vs. ExPASy Swiss-Prot
Match: AQP4_MOUSE (Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.731e-23
Identity = 61/154 (39.61%), Postives = 94/154 (61.04%), Query Frame = 3
Query:  234 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRS 692
            +F++A+ AEF+ATL+F+ + V + I      +    V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y++AQCLGAI G G++  ++    + +GG G  TV      G  L  E+I TF LV+T+F++ D KR+
Sbjct:   33 AFWKAVSAEFLATLIFVLLGVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIIAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 183          

HSP 2 Score: 25.0238 bits (53), Expect = 1.731e-23
Identity = 13/24 (54.17%), Postives = 14/24 (58.33%), Query Frame = 1
Query:  751 GSLGPIPLPGTGINPAWSFGAAVI 822
            G L  I   G  +NPA SFG AVI
Sbjct:  200 GHLFAINYTGASMNPARSFGPAVI 223          
BLAST of EY662311 vs. ExPASy Swiss-Prot
Match: AQP4_RAT (Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.962e-23
Identity = 61/154 (39.61%), Postives = 93/154 (60.39%), Query Frame = 3
Query:  234 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRS 692
            +F++A+ AEF+A L+F+ +SV + I      +    V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++  ++    + +GG G  TV      G  L  E+I TF LV+T+F++ D KR+
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 183          

HSP 2 Score: 25.0238 bits (53), Expect = 4.962e-23
Identity = 13/24 (54.17%), Postives = 14/24 (58.33%), Query Frame = 1
Query:  751 GSLGPIPLPGTGINPAWSFGAAVI 822
            G L  I   G  +NPA SFG AVI
Sbjct:  200 GHLFAINYTGASMNPARSFGPAVI 223          
BLAST of EY662311 vs. ExPASy Swiss-Prot
Match: AQP4_DIPME (Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.401e-23
Identity = 60/154 (38.96%), Postives = 94/154 (61.04%), Query Frame = 3
Query:  234 SFYRALIAEFVATLLFLYVSVATVIGHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRS 692
            +F++A+ AEF+A L+F+ +S+ + I    + +    V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++  ++    + +GG G  TV      G  L  E+I TF LV+T+F++ D KR+
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGKENPLP-VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 183          

HSP 2 Score: 25.0238 bits (53), Expect = 8.401e-23
Identity = 13/24 (54.17%), Postives = 14/24 (58.33%), Query Frame = 1
Query:  751 GSLGPIPLPGTGINPAWSFGAAVI 822
            G L  I   G  +NPA SFG AVI
Sbjct:  200 GHLFAINYTGASMNPARSFGPAVI 223          
BLAST of EY662311 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.100e-22
Identity = 66/168 (39.29%), Postives = 96/168 (57.14%), Query Frame = 3
Query:  243 RALIAEFVATLLFLYVSVATVIGHKKQSD--ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSPVPLLAPLPLG 737
            RA +AEF++TLLF++  V + I + K +   A    GL+ IA   G  +FV V   A ISGGH+NPAVTFGL +  ++++I  V Y +AQ LG+     L    +K+    L    ++VA+G      +  EII TF LVYTV+ +A DPK+ +  +  PL   L +G
Sbjct:   19 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFL----LKYVTGGLAVPTHSVAAGLGSIEGVVMEIIITFALVYTVYATAADPKKGSLGTIAPLAIGLIVG 182          

HSP 2 Score: 23.8682 bits (50), Expect = 1.100e-22
Identity = 12/27 (44.44%), Postives = 14/27 (51.85%), Query Frame = 1
Query:  739 LCGHGSLGPIPLPGTGINPAWSFGAAV 819
            + G   L   P  G  +NPA SFG AV
Sbjct:  180 IVGANILAAGPFSGGSMNPARSFGPAV 206          
BLAST of EY662311 vs. ExPASy Swiss-Prot
Match: AQP4_BOVIN (Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 3.133e-22
Identity = 61/157 (38.85%), Postives = 96/157 (61.15%), Query Frame = 3
Query:  234 SFYRALIAEFVATLLFLYVSVATVI---GHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRS 692
            +F++A+ AEF+A L+F+ +S+ + I   G +K       V ++ I+  FG  I  +V C   ISGGHINPAVT  +   R++S+ ++V Y+ AQCLGAI G G++  ++    + +GG G  TV    + G  L  E+I TF LV+T+F++ D KR+
Sbjct:   33 TFWKAVTAEFLAMLIFVLLSLGSTINWGGAEKPLP----VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRRISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTTVHGNLSAGHGLLVELIITFQLVFTIFASCDSKRT 183          

HSP 2 Score: 25.0238 bits (53), Expect = 3.133e-22
Identity = 13/24 (54.17%), Postives = 14/24 (58.33%), Query Frame = 1
Query:  751 GSLGPIPLPGTGINPAWSFGAAVI 822
            G L  I   G  +NPA SFG AVI
Sbjct:  200 GHLFAINYTGASMNPARSFGPAVI 223          
BLAST of EY662311 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.101e-22
Identity = 64/173 (36.99%), Postives = 102/173 (58.96%), Query Frame = 3
Query:  243 RALIAEFVATLLFLYVSVATVIGHKKQSDACGGV--GLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG---GANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSPVPLLAPLPLGFV 743
            +A +AEF++ L+F++    + +   K +D  G    GL+  + A    +FV V   A ISGGH+NPAVTFG F+   +SL++AV Y VAQ LG++    L+K        + GG   GA ++++G    +A+  EI+ TF LVYTV+ +A DPK+      + ++AP+ +GF+
Sbjct:   21 KAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKI-------ATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKK----GDLGVIAPIAIGFI 182          

HSP 2 Score: 23.0978 bits (48), Expect = 4.101e-22
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  778 GTGINPAWSFGAAVIS 825
            G  +NPA SFG AV++
Sbjct:  195 GASMNPAVSFGPAVVT 210          
BLAST of EY662311 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 6.939e-22
Identity = 63/173 (36.42%), Postives = 103/173 (59.54%), Query Frame = 3
Query:  243 RALIAEFVATLLFLYVSVATVIGHKKQSD--ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG---GANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSPVPLLAPLPLGFV 743
            +A +AEF++TL+F++    + +   K +D  A    GL+  + A    +FV V   A ISGGH+NPAVTFG F+   +SL++A+ Y VAQ LG++    L+K        + GG   GA ++++G    +A+  E++ TF LVYTV+ +A DPK+      + ++AP+ +GF+
Sbjct:   21 KAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKI-------ATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKK----GDLGVIAPIAIGFI 182          

HSP 2 Score: 23.0978 bits (48), Expect = 6.939e-22
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  778 GTGINPAWSFGAAVIS 825
            G  +NPA SFG AV++
Sbjct:  195 GASMNPAVSFGPAVVT 210          
BLAST of EY662311 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.944e-22
Identity = 60/170 (35.29%), Postives = 97/170 (57.06%), Query Frame = 3
Query:  243 RALIAEFVATLLFLYVSVATVIGHKKQSD--ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSPVPLLAPLPLGFV 743
            +A +AEF++T +F++    + I + K ++  A    GL+  + A    +FV V   A ISGGH+NPAVTFG F+   ++L+R + Y++AQ LG+I    L+         + G     ++ G   G AL  EI+ TF LVYTV+ +A DPK+      + ++AP+ +GF+
Sbjct:   21 KAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKK----GNIGIIAPIAIGFI 181          

HSP 2 Score: 24.2534 bits (51), Expect = 6.944e-22
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  778 GTGINPAWSFGAAVIS 825
            G  +NPA SFG AV+S
Sbjct:  194 GASMNPAVSFGPAVVS 209          
BLAST of EY662311 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.189e-22
Identity = 63/170 (37.06%), Postives = 99/170 (58.24%), Query Frame = 3
Query:  243 RALIAEFVATLLFLYVSVATVIGHKKQSD--ACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGGGANTVASGYNKGSALGAEIIGTFVLVYTVF-SATDPKRSARDSPVPLLAPLPLGFV 743
            +A +AEF+ATLLF++  V + I + K +   A    GL+ +A A    +FV V   A +SGGH+NPAVT GL +   ++++  + Y +AQCLG+     L    +K   N L    + VA+G +    +  EII TF LVYTV+ +A DPK+ +    + ++AP+ +GF+
Sbjct:   19 KAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLL----LKFVTNGLSVPTHGVAAGMDAIQGVVMEIIITFALVYTVYATAADPKKGS----LGVIAPIAIGFI 180          
BLAST of EY662311 vs. ExPASy Swiss-Prot
Match: AQP4_HUMAN (Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 8.975e-22
Identity = 61/157 (38.85%), Postives = 94/157 (59.87%), Query Frame = 3
Query:  234 SFYRALIAEFVATLLFLYVSVATVI---GHKKQSDACGGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVAYMVAQCLGAICGVGLVKAFMKHEYNSLGG-GANTVASGYNKGSALGAEIIGTFVLVYTVFSATDPKRS 692
            +F++A+ AEF+A L+F+ +S+ + I   G +K       V ++ I+  FG  I  +V C   ISGGHINPAVT  +   RK+S+ ++V Y+ AQCLGAI G G++  ++    + +GG G   V      G  L  E+I TF LV+T+F++ D KR+
Sbjct:   33 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLP----VDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGIL--YLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRT 183          

HSP 2 Score: 25.0238 bits (53), Expect = 8.975e-22
Identity = 13/24 (54.17%), Postives = 14/24 (58.33%), Query Frame = 1
Query:  751 GSLGPIPLPGTGINPAWSFGAAVI 822
            G L  I   G  +NPA SFG AVI
Sbjct:  200 GHLFAINYTGASMNPARSFGPAVI 223          
The following BLAST results are available for this feature:
BLAST of EY662311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
AQP4_MOUSE1.731e-2339.61Aquaporin-4 OS=Mus musculus GN=Aqp4 PE=2 SV=2[more]
AQP4_RAT4.962e-2339.61Aquaporin-4 OS=Rattus norvegicus GN=Aqp4 PE=1 SV=1[more]
AQP4_DIPME8.401e-2338.96Aquaporin-4 OS=Dipodomys merriami GN=AQP4 PE=2 SV=... [more]
TIP21_ARATH1.100e-2239.29Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
AQP4_BOVIN3.133e-2238.85Aquaporin-4 OS=Bos taurus GN=AQP4 PE=2 SV=3[more]
TIP12_ORYSJ4.101e-2236.99Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP12_MAIZE6.939e-2236.42Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP1_MEDTR6.944e-2235.29Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP_ANTMA7.189e-2237.06Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
AQP4_HUMAN8.975e-2238.85Aquaporin-4 OS=Homo sapiens GN=AQP4 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-042-G06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY662311 ID=EY662311; Name=EY662311; organism=Citrus sinensis; type=EST; length=901bp
TTTTCGAACAGGGGGCGTCCGAGCTTTTCTCACACCAGAGAGGGTGTGTG
CTTTTCTTTGATTGTTCCAAAGAGAAATCAAAATTTTGTGCAGAAGAAGA
AGAAGAAGAAGAAGAAAGAAAGATGTCAAAGGAAGTGAATGAAGAAGGAC
AAACTCACCGCCATCACCATGGCAAGGACTACGTGGACCCACCACCAGCA
CCACTCATTGACATGGCTGAGCTCAAGCTCTGGTCCTTTTACAGAGCTCT
CATAGCCGAGTTCGTGGCCACTCTCCTCTTCCTCTACGTCAGTGTTGCCA
CTGTCATTGGCCACAAGAAACAAAGTGATGCCTGTGGTGGTGTTGGCCTT
TTGGGTATTGCATGGGCCTTTGGTGGCATGATCTTCGTCCTTGTTTACTG
CACCGCTGGCATTTCTGGTGGTCACATTAACCCTGCTGTGACGTTTGGGC
TGTTCTTGGCAAGGAAGGTATCATTGATCAGGGCTGTGGCTTACATGGTG
GCTCAGTGCTTGGGTGCCATTTGCGGTGTTGGTTTGGTCAAGGCCTTCAT
GAAGCATGAGTACAACTCACTTGGTGGTGGTGCTAACACTGTGGCTTCTG
GCTACAACAAAGGATCAGCCTTGGGTGCTGAGATTATTGGTACCTTCGTG
CTTGTTTACACAGTCTTCTCGGCCACAGACCCCAAGAGAAGCGCTCGTGA
CTCTCCCGTGCCCCTTTTGGCTCCACTTCCATTGGGATTTGTGTGGTCAT
GGGTCACTTGGCCCCATCCCCCTCCCTGGAACGGGCATCAACCCTGCCTG
GAGCTTTGGGGCTGCTGTTATCTCCACAATGACCAGGCCGGGGATGACCT
TGGATCTTCTGGGTGGTCCTTCCGTGGGACCTTGGCTGCCGCGGAATACA
A
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