EY744241

Overview
NameEY744241
Unique NameEY744241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.664e-25
Identity = 53/108 (49.07%), Postives = 79/108 (73.15%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A  N+  ++ GNKSDL   + V        A++ G+ FLETSA  AT+
Sbjct:   53 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATN 160          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.664e-25
Identity = 56/107 (52.34%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEG-LSFLETSALEA 618
            ++++GK VK Q+WDTAGQER+R IT +YYR A  A++ YD+T+R TF++V  W+ E+  +  +N+VIM+ GNKSDL   R V  ED  +LAEK G L+ LETSA E+
Sbjct:   59 LEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKYGLLAVLETSAKES 165          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.664e-25
Identity = 49/103 (47.57%), Postives = 76/103 (73.79%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++++GK +K QIWDTAGQER+  IT++YYRGA+G +LVYDIT  ++F+N+ +WLR + +HA+ ++  M+ GNK D++  R V +  G  +A + G+ F ETSA
Sbjct:   51 VELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSA 153          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.664e-25
Identity = 49/103 (47.57%), Postives = 76/103 (73.79%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++++GK +K QIWDTAGQER+  IT++YYRGA+G +LVYDIT  ++F+N+ +WLR + +HA+ ++  M+ GNK D++  R V +  G  +A + G+ F ETSA
Sbjct:   51 VELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSA 153          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.664e-25
Identity = 49/103 (47.57%), Postives = 76/103 (73.79%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++++GK +K QIWDTAGQER+  IT++YYRGA+G +LVYDIT  ++F+N+ +WLR + +HA+ ++  M+ GNK D++  R V +  G  +A + G+ F ETSA
Sbjct:   51 VELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSA 153          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.664e-25
Identity = 49/103 (47.57%), Postives = 76/103 (73.79%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            ++++GK +K QIWDTAGQER+  IT++YYRGA+G +LVYDIT  ++F+N+ +WLR + +HA+ ++  M+ GNK D++  R V +  G  +A + G+ F ETSA
Sbjct:   51 VELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSA 153          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.173e-25
Identity = 51/106 (48.11%), Postives = 81/106 (76.42%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEA 618
            ++ +GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD T+ ++F+NV +WL E+  +A+ ++  ++ GNK+D+   + V+ E G +LA++ G+ FLETSA ++
Sbjct:   50 IEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDS 155          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.173e-25
Identity = 57/105 (54.29%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  298 LMQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSAL 612
            ++ V GK VK QIWDTAGQER+R++T +YYRGA GALLVYDIT R+T++ +  WL + R  A  NIV+++ GNK DL+  R VT  +    A++  L FLETSAL
Sbjct:   49 IINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCGNKKDLDADREVTFLEASRFAQENELMFLETSAL 153          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 52/108 (48.15%), Postives = 79/108 (73.15%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GK +K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL E+  +A  N+  ++ GNKSDL   + V  +   + A++ G+ FLETSA  AT+
Sbjct:   50 VELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDLTGKKVVDYQAAKAFADEIGIPFLETSAKNATN 157          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.838e-25
Identity = 50/103 (48.54%), Postives = 76/103 (73.79%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            + + GK VK Q+WDTAGQER+R IT+AYYRGA+G +LVYD+T  +TF N+ +W + + +HA+    +++ GNKSD+   R VT + G +LA++ G+ F+E+SA
Sbjct:   62 VDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSA 163          
The following BLAST results are available for this feature:
BLAST of EY744241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
RAB1A_LYMST1.664e-2549.07Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RAB19_RAT1.664e-2552.34Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]
RAB10_PONAB1.664e-2547.57Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE1.664e-2547.57Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN1.664e-2547.57Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_CANFA1.664e-2547.57Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RABD1_ARATH2.173e-2548.11Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB4A_MOUSE2.173e-2554.29Ras-related protein Rab-4A OS=Mus musculus GN=Rab4... [more]
YPTV1_VOLCA2.838e-2548.15GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
SEC4_YEAST2.838e-2548.54Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-D12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744241 ID=EY744241; Name=EY744241; organism=Citrus sinensis; type=EST; length=624bp
CCACGCGTCCGCAAATATAAATATTAAATAACTGTCTCCGGTACTCTGTC
AAATGAAGATCAATGAACACGATGAGCTGATCTTCTGATAAAGTGATTGA
CATGTTCCTTTGGTCACCCGAGTCCTCAAGAATTTACATCTTTCTTTTGT
GCCTAAGATGTATGGTTTGAGTTTTCTTTTGTGGATATAAGTTCCAACTA
GCATATAATTAAATATACTTGCTTCCTTAAATGTCGTTAATACTGTTGTG
GATAAATTGTTTGCACTCTGGATCTATGTGTAGCTAATATCTAATATTTG
ATGCAGGTAGAAGGGAAAACAGTTAAGGCACAGATTTGGGATACTGCAGG
CCAGGAGCGGTACCGAGCAATCACCAGTGCCTACTATAGAGGAGCAGTTG
GTGCACTCCTTGTCTATGATATAACCAAGAGGCAAACTTTTGACAATGTC
CTAAGGTGGCTTCGTGAATTGAGGGACCATGCAGATTCAAACATTGTCAT
AATGATGGCTGGAAATAAGTCGGACTTAAATCATCTGAGAGCTGTTACCG
AGGAGGATGGCCATTCTTTGGCTGAAAAAGAAGGTCTCTCATTTCTTGAG
ACATCAGCTTTGGAAGCAACCCAT
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