EY744241

Overview
NameEY744241
Unique NameEY744241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 52/108 (48.15%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T ++++ NV +WL+E+  +A  N+  ++ GNKSDL   + V        A+  G+ FLETSA  AT+
Sbjct:   50 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATN 157          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 52/108 (48.15%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A  N+  ++ GNK DL   + V        A+  G+ FLETSA  AT+
Sbjct:   53 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 160          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 52/108 (48.15%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A  N+  ++ GNK DL   + V        A+  G+ FLETSA  AT+
Sbjct:   53 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 160          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 52/108 (48.15%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A  N+  ++ GNK DL   + V        A+  G+ FLETSA  AT+
Sbjct:   53 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 160          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 52/108 (48.15%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T +++F+NV +WL+E+  +A  N+  ++ GNK DL   + V        A+  G+ FLETSA  AT+
Sbjct:   53 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 160          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 47/103 (45.63%), Postives = 75/103 (72.82%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            +++EGK +K Q+WDTAGQER++ IT+AYYRGA+G +LVYDIT  ++F+N+  W++ ++++A + +  ++ GNK D+   R V +E    LA + G+ F ETSA
Sbjct:   50 VEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSA 152          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB4A_DANRE (Ras-related protein Rab-4A OS=Danio rerio GN=rab4a PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.322e-25
Identity = 57/105 (54.29%), Postives = 74/105 (70.48%), Query Frame = 1
Query:  298 LMQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSAL 612
            ++ V  K VK QIWDTAGQER+R++T +YYRGA GALLVYDIT R+T++ +  WL + R  A  NIVI++ GNK DL+  R VT  +    A++  L FLETSAL
Sbjct:   49 IISVVNKFVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSAL 153          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.322e-25
Identity = 51/108 (47.22%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GKT+K QIWDTAGQER+R +TS+YYRGA G ++VYD+T ++++ NV +WL+E+  +A  N+  ++ GNKSDL   + V        A+  G+ FLETSA  AT+
Sbjct:   50 IELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGVPFLETSAKNATN 157          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.256e-25
Identity = 53/108 (49.07%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            + ++GKT+K QIWDTAGQER+R ITS+YYRGA G +LVYD T + +F NV +W+ E+  +A  N+  ++ GNK+DL + + V      S AE  G+ F+ETSA  AT+
Sbjct:   52 LNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATN 159          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB19_XENLA (Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.256e-25
Identity = 54/107 (50.47%), Postives = 77/107 (71.96%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEG-LSFLETSALEA 618
            + + GK VK Q+WDTAGQER+R IT +YYR A GA++ YDIT+RQ+F++V  W+ E   +  +N+++M+ GNKSDL   R +  E+  +LAEK G L+ LETSA E+
Sbjct:   57 LNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAGKYGAANLMLMLMGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKES 163          
The following BLAST results are available for this feature:
BLAST of EY744241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
RAB1B_MOUSE4.840e-2548.15Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1A_RAT4.840e-2548.15Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_MOUSE4.840e-2548.15Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_HUMAN4.840e-2548.15Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1... [more]
RAB1A_CANFA4.840e-2548.15Ras-related protein Rab-1A OS=Canis familiaris GN=... [more]
RAB13_MESAU4.840e-2545.63Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
RAB4A_DANRE6.322e-2554.29Ras-related protein Rab-4A OS=Danio rerio GN=rab4a... [more]
RAB1B_RAT6.322e-2547.22Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1D_DICDI8.256e-2549.07Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB19_XENLA8.256e-2550.47Ras-related protein Rab-19 OS=Xenopus laevis GN=ra... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-D12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744241 ID=EY744241; Name=EY744241; organism=Citrus sinensis; type=EST; length=624bp
CCACGCGTCCGCAAATATAAATATTAAATAACTGTCTCCGGTACTCTGTC
AAATGAAGATCAATGAACACGATGAGCTGATCTTCTGATAAAGTGATTGA
CATGTTCCTTTGGTCACCCGAGTCCTCAAGAATTTACATCTTTCTTTTGT
GCCTAAGATGTATGGTTTGAGTTTTCTTTTGTGGATATAAGTTCCAACTA
GCATATAATTAAATATACTTGCTTCCTTAAATGTCGTTAATACTGTTGTG
GATAAATTGTTTGCACTCTGGATCTATGTGTAGCTAATATCTAATATTTG
ATGCAGGTAGAAGGGAAAACAGTTAAGGCACAGATTTGGGATACTGCAGG
CCAGGAGCGGTACCGAGCAATCACCAGTGCCTACTATAGAGGAGCAGTTG
GTGCACTCCTTGTCTATGATATAACCAAGAGGCAAACTTTTGACAATGTC
CTAAGGTGGCTTCGTGAATTGAGGGACCATGCAGATTCAAACATTGTCAT
AATGATGGCTGGAAATAAGTCGGACTTAAATCATCTGAGAGCTGTTACCG
AGGAGGATGGCCATTCTTTGGCTGAAAAAGAAGGTCTCTCATTTCTTGAG
ACATCAGCTTTGGAAGCAACCCAT
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