EY744241

Overview
NameEY744241
Unique NameEY744241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.256e-25
Identity = 47/103 (45.63%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            + +EGK +K Q+WDTAGQER++ IT+AYYRGA+G +LVYDIT  ++F+N+  W++ ++++A + +  ++ GNK D+   R V +E    LA + G+ F ETSA
Sbjct:   50 VDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSA 152          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.256e-25
Identity = 47/103 (45.63%), Postives = 74/103 (71.84%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            + +EGK +K Q+WDTAGQER++ IT+AYYRGA+G +LVYDIT  ++F+N+  W++ ++++A + +  ++ GNK D+   R V +E    LA + G+ F ETSA
Sbjct:   50 VDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSA 152          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.256e-25
Identity = 48/103 (46.60%), Postives = 73/103 (70.87%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            +++ GK +K QIWDTAGQER+  IT++YYRGA+G +LVYDIT  ++F+N+ +WLR + +HA+ ++  M+ GNK D+   R V +  G  +A +  + F ETSA
Sbjct:   51 VELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSA 153          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.078e-24
Identity = 54/107 (50.47%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEG-LSFLETSALEA 618
            + ++GK VK Q+WDTAGQER+R IT +YYR A  A++ YD+T+R TF+++  W+ E+  +  +N+VIM+ GNK DL   R V  ED  +LAEK G L+ LETSA E+
Sbjct:   59 LDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKES 165          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.408e-24
Identity = 51/108 (47.22%), Postives = 78/108 (72.22%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GKTVK QIWDTAGQER+R ITS+YYRG+ G ++VYD+T +++F+ V  WL+E+  +A S ++ ++ GNK DL   R V  +     A+   + FLETSAL++T+
Sbjct:   50 VELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTN 157          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.408e-24
Identity = 52/108 (48.15%), Postives = 76/108 (70.37%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GKT+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T + +F+NV +WL+E+  +A  N+  ++ GNK DL   + V        A+  G+ FLETSA  AT+
Sbjct:   53 IELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATN 160          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB19_BOVIN (Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.408e-24
Identity = 55/107 (51.40%), Postives = 76/107 (71.03%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEG-LSFLETSALEA 618
            ++++GK VK Q+WDTAGQER+R IT +YYR A  A++ YD+T+R TF++V  W+ E+  +  +N+VIM+ GNK DL   R V  ED   LAEK G L+ LETSA E+
Sbjct:   59 LEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCDLWEKRHVLFEDACILAEKYGLLAVLETSAKES 165          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.839e-24
Identity = 48/103 (46.60%), Postives = 75/103 (72.82%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSA 609
            + +  + VK Q+WDTAGQER+R IT+AYYRGA+G LLVYD+T  ++F+N+  W + ++ +A+  + +++ GNK DL+  R V+ E G +LA+K G+ FLE S+
Sbjct:   53 IDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASS 155          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.839e-24
Identity = 57/109 (52.29%), Postives = 79/109 (72.48%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEK-EGLSFLETSALEATH 624
            ++++GK VK QIWDTAGQER+R IT +YYR A GA+L YDI+KR TF +V  W+ ++R +A SNIV ++ GNKSDL  LR V   +  SLAE  + L  +ETSA ++++
Sbjct:   58 LEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADLREVPLAEAQSLAEHYDILCAIETSAKDSSN 166          
BLAST of EY744241 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.839e-24
Identity = 52/108 (48.15%), Postives = 76/108 (70.37%), Query Frame = 1
Query:  301 MQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRAVTEEDGHSLAEKEGLSFLETSALEATH 624
            ++++GKT+K QIWDTAGQER R ITS+YYRGA G ++VYD+T ++++ NV +WL+E+  +A  N+  ++ GNKSDL   + V        A+  G+ FLETSA  AT+
Sbjct:   50 IELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATN 157          
The following BLAST results are available for this feature:
BLAST of EY744241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 401
Match NameE-valueIdentityDescription
RAB13_HUMAN8.256e-2545.63Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN8.256e-2545.63Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB10_DISOM8.256e-2546.60Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RAB19_HUMAN1.078e-2450.47Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
YPT1_YEAST1.408e-2447.22GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1A_PIG1.408e-2448.15Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB19_BOVIN1.408e-2451.40Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 ... [more]
RYL1_YARLI1.839e-2446.60Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB43_RAT1.839e-2452.29Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB1B_PIG1.839e-2448.15Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-D12-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744241 ID=EY744241; Name=EY744241; organism=Citrus sinensis; type=EST; length=624bp
CCACGCGTCCGCAAATATAAATATTAAATAACTGTCTCCGGTACTCTGTC
AAATGAAGATCAATGAACACGATGAGCTGATCTTCTGATAAAGTGATTGA
CATGTTCCTTTGGTCACCCGAGTCCTCAAGAATTTACATCTTTCTTTTGT
GCCTAAGATGTATGGTTTGAGTTTTCTTTTGTGGATATAAGTTCCAACTA
GCATATAATTAAATATACTTGCTTCCTTAAATGTCGTTAATACTGTTGTG
GATAAATTGTTTGCACTCTGGATCTATGTGTAGCTAATATCTAATATTTG
ATGCAGGTAGAAGGGAAAACAGTTAAGGCACAGATTTGGGATACTGCAGG
CCAGGAGCGGTACCGAGCAATCACCAGTGCCTACTATAGAGGAGCAGTTG
GTGCACTCCTTGTCTATGATATAACCAAGAGGCAAACTTTTGACAATGTC
CTAAGGTGGCTTCGTGAATTGAGGGACCATGCAGATTCAAACATTGTCAT
AATGATGGCTGGAAATAAGTCGGACTTAAATCATCTGAGAGCTGTTACCG
AGGAGGATGGCCATTCTTTGGCTGAAAAAGAAGGTCTCTCATTTCTTGAG
ACATCAGCTTTGGAAGCAACCCAT
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