EY744227

Overview
NameEY744227
Unique NameEY744227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: NEDD8_RAT (NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.211e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   34 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 261
            M I VKTLTGK I +++E +D ++ +K ++++KEGI P QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: NEDD8_RABIT (NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.211e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   34 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 261
            M I VKTLTGK I +++E +D ++ +K ++++KEGI P QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: NEDD8_MOUSE (NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.211e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   34 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 261
            M I VKTLTGK I +++E +D ++ +K ++++KEGI P QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: NEDD8_HUMAN (NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.211e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   34 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 261
            M I VKTLTGK I +++E +D ++ +K ++++KEGI P QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: NEDD8_BOVIN (NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.211e-17
Identity = 42/76 (55.26%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   34 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 261
            M I VKTLTGK I +++E +D ++ +K ++++KEGI P QQRLI++GKQ+ D +T ADY I   S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: RUB3_ORYSJ (NEDD8-like protein RUB3 OS=Oryza sativa subsp. japonica GN=RUB3 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.194e-17
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1
Query:   34 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 261
            + + V+TLTGK I +++E +DT+D +K +++++EGI P QQRLI+ GKQL D +T  DY I+  S LHLVL LRGG
Sbjct:    1 LNVKVRTLTGKEIDIDIEMTDTVDRIKERVEEREGIPPVQQRLIYGGKQLADDKTAHDYKIEAGSVLHLVLALRGG 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: RS27A_DROME (40S ribosomal protein S27a OS=Drosophila melanogaster GN=RpS27A PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.153e-17
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 1
Query:  331 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 489
            LAVL++YKVD++GK+ RLR+ECP   CGAG FMA H DRHYCGKC LT+V+ K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSK 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: RUB3_ARATH (NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN=RUB3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.718e-16
Identity = 41/76 (53.95%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   34 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 261
            M+I VKTLT K I +E+E +DTI+ +K +I++KEGI P  QR+++ GKQL D  T   YN+++ S LHLVL LRGG
Sbjct:    1 MEIKVKTLTEKQIDIEIELTDTIERIKERIEEKEGIPPVHQRIVYTGKQLADDLTAKHYNLERGSVLHLVLALRGG 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: NEDD8_DICDI (NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 6.056e-16
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 1
Query:   34 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 261
            M I VKTLTGK I ++++ +D I  +K ++++KEGI P QQRLIF GKQ+ D +  ++Y+I+  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIEIDIDPTDKIQRIKERVEEKEGIPPSQQRLIFGGKQMGDDKPASEYSIEGGSVLHLVLALRGG 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.909e-16
Identity = 39/77 (50.65%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   34 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGA 264
            M I VKTLTGK I L+++ +D +  +K ++++KEGI P QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG+
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGGS 77          
The following BLAST results are available for this feature:
BLAST of EY744227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
NEDD8_RAT3.211e-1755.26NEDD8 OS=Rattus norvegicus GN=Nedd8 PE=1 SV=1[more]
NEDD8_RABIT3.211e-1755.26NEDD8 OS=Oryctolagus cuniculus GN=NEDD8 PE=3 SV=1[more]
NEDD8_MOUSE3.211e-1755.26NEDD8 OS=Mus musculus GN=Nedd8 PE=1 SV=2[more]
NEDD8_HUMAN3.211e-1755.26NEDD8 OS=Homo sapiens GN=NEDD8 PE=1 SV=1[more]
NEDD8_BOVIN3.211e-1755.26NEDD8 OS=Bos taurus GN=NEDD8 PE=3 SV=1[more]
RUB3_ORYSJ4.194e-1752.63NEDD8-like protein RUB3 OS=Oryza sativa subsp. jap... [more]
RS27A_DROME7.153e-1767.9240S ribosomal protein S27a OS=Drosophila melanogas... [more]
RUB3_ARATH2.718e-1653.95NEDD8-like protein RUB3 OS=Arabidopsis thaliana GN... [more]
NEDD8_DICDI6.056e-1652.63NEDD8 OS=Dictyostelium discoideum GN=nedd8 PE=3 SV... [more]
UBL1_SCHPO7.909e-1650.65Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C09-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744227 ID=EY744227; Name=EY744227; organism=Citrus sinensis; type=EST; length=913bp
TGAAATTTGCTGGGTCTCTCCTCATCTGCAGCCATGCAGATCTTCGTGAA
AACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCA
TCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCTACCGGAC
CAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCT
AGCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTC
TCCGTGGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAA
AAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTA
CAAGGTCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGA
ATGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCAC
TACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGA
TTGATTCAAATTAGGTGGTTTGTTTTGCTTATTTTAATTAGTATTAATTA
CTATGGGTTTTTGTGGTTCAAAAATTAAGACTCTTTTCTAATTTTTGTTT
GAACTAAAACTTGTTTGGCTTGAACCGTTTTAATTTAAATGGTTACCTGT
TTTTAATTTTAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAGAA
AAATGGGGGGGGCCGCTCATTAAGAATCCAGTCTAATCTACGCCCGGGCG
TGCGAATTTTCTAATTTTCTTTTATTTGTGGTCACCCTAAATTTTAATTC
TATGGGCGCTGTTGTTTTTTAAAAGTAGGGGGAAGGGGGGAAAAACCCCC
GGTGTGGTTTTCCCCCAACATTTTTTCCCTCCTTGTGATACACTCAATCC
CCCCCCCTTTTTC
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