EY744227

Overview
NameEY744227
Unique NameEY744227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.615e-32
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1
Query:   34 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 261
            MQIFVKTLTGKTI LEVE SDTI+NVKAKIQDKEGI PDQQRLIFAGKQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.485e-30
Identity = 68/76 (89.47%), Postives = 71/76 (93.42%), Query Frame = 1
Query:   34 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 261
            MQIFVKTLTG TI LEVE SDTI+NVKAKIQDKEGI PDQQRLIFA KQLE+GRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.625e-27
Identity = 60/76 (78.95%), Postives = 66/76 (86.84%), Query Frame = 1
Query:   34 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 261
            MQIFVKTLTGKTIT+E E  DT+  VK KI DKEG+  DQQRLI+AGKQLED +TLADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.942e-26
Identity = 57/76 (75.00%), Postives = 67/76 (88.16%), Query Frame = 1
Query:   34 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 261
            MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+  DQQRLIFAGKQLED +T+ADYNIQKESTLH+VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: RS27A_SOLTU (40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.101e-25
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1
Query:  331 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 492
            LAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY KA
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKA 77          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: RS27A_SOLLC (40S ribosomal protein S27a OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.101e-25
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1
Query:  331 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 492
            LAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY KA
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKA 77          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.878e-25
Identity = 59/63 (93.65%), Postives = 61/63 (96.83%), Query Frame = 1
Query:   67 TITLEVESSDTIDNVKAKIQDKEGILPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 255
            TITLEVE SDTI+NVKAKIQDKEGI PDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: RS27A_LUPAL (40S ribosomal protein S27a OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.878e-25
Identity = 52/54 (96.30%), Postives = 52/54 (96.30%), Query Frame = 1
Query:  331 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 492
            LAVLQFYKVDDSGKVQRLRKECPN ECGAGTFMANHFDRHYCGKCG TYVYQKA
Sbjct:   24 LAVLQFYKVDDSGKVQRLRKECPNTECGAGTFMANHFDRHYCGKCGKTYVYQKA 77          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: R27AB_ARATH (40S ribosomal protein S27a-2 OS=Arabidopsis thaliana GN=UBQ6 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.626e-24
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1
Query:  331 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 489
            LAVLQFYKVD SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK
Sbjct:   24 LAVLQFYKVDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQK 76          
BLAST of EY744227 vs. ExPASy Swiss-Prot
Match: R27AC_ARATH (40S ribosomal protein S27a-3 OS=Arabidopsis thaliana GN=UBQ5 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.042e-24
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 1
Query:  331 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 489
            LAVLQFYK+D SGKVQRLRKECPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK
Sbjct:   24 LAVLQFYKIDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQK 76          
The following BLAST results are available for this feature:
BLAST of EY744227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
UBIQ_LEIMA4.615e-3292.11Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_LEITA1.485e-3089.47Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
UBIL_NPVOP7.625e-2778.95Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC4.942e-2675.00Ubiquitin-like protein OS=Autographa californica n... [more]
RS27A_SOLTU1.101e-2596.3040S ribosomal protein S27a OS=Solanum tuberosum GN... [more]
RS27A_SOLLC1.101e-2596.3040S ribosomal protein S27a OS=Solanum lycopersicum... [more]
UBIQ_LUMTE1.878e-2593.65Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
RS27A_LUPAL1.878e-2596.3040S ribosomal protein S27a OS=Lupinus albus PE=3 S... [more]
R27AB_ARATH4.626e-2494.3440S ribosomal protein S27a-2 OS=Arabidopsis thalia... [more]
R27AC_ARATH6.042e-2492.4540S ribosomal protein S27a-3 OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C09-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744227 ID=EY744227; Name=EY744227; organism=Citrus sinensis; type=EST; length=913bp
TGAAATTTGCTGGGTCTCTCCTCATCTGCAGCCATGCAGATCTTCGTGAA
AACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCA
TCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCTACCGGAC
CAGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCT
AGCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTC
TCCGTGGTGGCGCGAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAA
AAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTA
CAAGGTCGATGATTCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGA
ATGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCAC
TACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGA
TTGATTCAAATTAGGTGGTTTGTTTTGCTTATTTTAATTAGTATTAATTA
CTATGGGTTTTTGTGGTTCAAAAATTAAGACTCTTTTCTAATTTTTGTTT
GAACTAAAACTTGTTTGGCTTGAACCGTTTTAATTTAAATGGTTACCTGT
TTTTAATTTTAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAGAA
AAATGGGGGGGGCCGCTCATTAAGAATCCAGTCTAATCTACGCCCGGGCG
TGCGAATTTTCTAATTTTCTTTTATTTGTGGTCACCCTAAATTTTAATTC
TATGGGCGCTGTTGTTTTTTAAAAGTAGGGGGAAGGGGGGAAAAACCCCC
GGTGTGGTTTTCCCCCAACATTTTTTCCCTCCTTGTGATACACTCAATCC
CCCCCCCTTTTTC
back to top