EY744220

Overview
NameEY744220
Unique NameEY744220
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9111 contig Csv1_Contig9111:811..1755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY744220 vs. ExPASy Swiss-Prot
Match: WDR48_CAEBR (WD repeat-containing protein 48 homolog OS=Caenorhabditis briggsae GN=CBG18038 PE=3 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 7.502e-17
Identity = 44/121 (36.36%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   67 PNFTIPGIPGIVQHEILNNRRHVLTKDTAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLQIAGKPEDDKVNLARETLKGLLAHW 429
            P   I G P I +++ILN++RHVLT DT  +V L+++  G  V++YGK + E   EE  + V +P+WF VD++ G L + LD    FS+ + + D       ++ KVN     L+ L   W
Sbjct:  394 PELMISGAPAINKYKILNDKRHVLTSDTEDNVALYDVLAGKKVKEYGKRALENVFEEKSKTVYVPSWFIVDSKSGMLQITLDELDVFSSWLTTKDAGFDDSDKETKVNYGGMMLRSLFERW 514          
BLAST of EY744220 vs. ExPASy Swiss-Prot
Match: WDR48_CULQU (WD repeat-containing protein 48 homolog OS=Culex quinquefasciatus GN=CpipJ_CPIJ014111 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.912e-12
Identity = 49/147 (33.33%), Postives = 78/147 (53.06%), Query Frame = 1
Query:   22 PVSLEGSTPVPVFKEPNFTIPGIPG---IVQHEILNNRRHVLTKDTAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVSIPAWFTVDTRLGSLSVHL--DTPQCFSAEMYSADLQIAGKPE------DDKVNLARETLKGLLAHW 429
            PV+   S   P      + +  I G   I ++ +LN++R +LTKD+  +V ++++ +   VED GK  +EE+ ++  + V +P WFTVD + G  ++ L  D   CF+A   SA+   AG PE      D KVN     L+ LL +W
Sbjct:  336 PVTNSASNATPASAGKGYEVACIKGGAAIKKYHVLNDKRFMLTKDSEQNVAIYDVLKVKKVEDLGKVDYEEEIKKRSQRVHVPNWFTVDLKTGMPTIVLGQDEVDCFAA-WVSAE---AGLPEHAESGSDPKVNYGSLLLQALLEYW 478          
BLAST of EY744220 vs. ExPASy Swiss-Prot
Match: YA4E_SCHPO (Uncharacterized WD repeat-containing protein C31A2.14 OS=Schizosaccharomyces pombe GN=SPAC31A2.14 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.563e-12
Identity = 57/199 (28.64%), Postives = 99/199 (49.75%), Query Frame = 1
Query:   34 EGSTPVPVFKEPNFTIPGIPGIVQHEILNNRRHVLTKDTAGSVKLWEITRGVVVEDYGKA-SFEEKKEELFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMYSADLQI--AGKPEDDKVNLARETLKGLLAHWLAKRKLRLGSQATVNGDVLSAKDISARSLTHSRVEV-DGNAENDSVVYPPFEFSTISPPSIITE 618
            E  + + + K P++ I G  G++++ +L +RRHVLT+D  G+  LW+I       ++ K+  FE+  + L  + +IP W +V+  LG L+V LD      AE+Y+ +  +     P D ++NL    LK L   ++   +L    +   N DV+ ++  + + +   R E   GN    S + P    S  SP S+  E
Sbjct:  389 ESYSNINLTKTPDYVIHGGIGLLKYRMLGDRRHVLTEDAVGNKCLWDILACKQAGEFDKSEDFEKIVQSLDTVQAIPRWASVNCLLGILAVTLDENHYMDAEIYADECPLLKVDSPSDKRINLGVWILKNLFREFI-DAELHRDLKFRQNLDVVRSE--AKKQIEAQREEARKGNVNMPSALSPLRIRSRPSPLSLPPE 584          
BLAST of EY744220 vs. ExPASy Swiss-Prot
Match: WDR48_AEDAE (WD repeat-containing protein 48 homolog OS=Aedes aegypti GN=AAEL012158 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.239e-11
Identity = 45/125 (36.00%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   79 IPGIPGIVQHEILNNRRHVLTKDTAGSVKLWEITRGVVVEDYGKASFEEKKEELFEMVSIPAWFTVDTRLGSLSVHL--DTPQCFSAEMYSADLQIAGKPE------DDKVNLARETLKGLLAHW 429
            I G   I ++ +LN++R +LTKD+  +V ++++ +   VED GK  +EE+ ++  + V +P WFTVD + G  ++ L  D   CF+A   SA+   AG PE      D KVN     L+ LL +W
Sbjct:  336 IKGGAAIKKYHVLNDKRFMLTKDSEMNVAIYDVLKVKKVEDLGKVDYEEEIKKRSQKVYVPNWFTVDLKTGMPTIVLGQDEVDCFAA-WVSAE---AGLPEHAESGTDPKVNYGSLLLQALLEYW 456          
The following BLAST results are available for this feature:
BLAST of EY744220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
WDR48_CAEBR7.502e-1736.36WD repeat-containing protein 48 homolog OS=Caenorh... [more]
WDR48_CULQU1.912e-1233.33WD repeat-containing protein 48 homolog OS=Culex q... [more]
YA4E_SCHPO5.563e-1228.64Uncharacterized WD repeat-containing protein C31A2... [more]
WDR48_AEDAE1.239e-1136.00WD repeat-containing protein 48 homolog OS=Aedes a... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C02-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744220 ID=EY744220; Name=EY744220; organism=Citrus sinensis; type=EST; length=945bp
CCCACGCGTCCGCCCACGCGTCCGGTTTCGTTGGAAGGATCTACGCCAGT
TCCCGTTTTCAAAGAACCAAACTTTACCATTCCTGGAATTCCGGGAATTG
TGCAGCATGAAATCTTAAATAATAGAAGGCATGTTTTGACTAAGGACACT
GCTGGTTCAGTGAAGCTATGGGAGATCACGCGAGGTGTTGTGGTTGAGGA
CTATGGAAAGGCTTCATTTGAGGAGAAAAAAGAAGAACTATTTGAGATGG
TAAGTATTCCTGCGTGGTTCACGGTGGACACTAGACTTGGAAGCTTGTCT
GTTCATTTGGACACACCACAATGCTTCTCCGCTGAGATGTATTCAGCGGA
CCTTCAAATTGCTGGAAAGCCTGAGGACGATAAGGTTAACTTAGCTCGTG
AAACCCTCAAAGGTCTACTGGCTCATTGGTTAGCTAAGAGAAAGCTGAGA
CTTGGATCACAAGCTACTGTCAATGGGGATGTTTTATCAGCAAAGGATAT
CAGTGCTAGAAGTCTTACCCATTCAAGAGTTGAAGTAGATGGTAATGCTG
AAAATGACTCAGTGGTGTATCCTCCATTTGAATTCTCAACAATTTCGCCA
CCATCCATAATTACGGAAGGGTTCTCAAGGAAGCCCATGGAAAAAGAAAA
ATTACAAACTTGGATGGGAACTGAAAATGACAAGGACTTTTTCCTTGGTG
GGGTCTTGACTGTGTCTTGAAAAACCTCCTACCACCCAAAAAAAACACAA
ATGCAGCTTTTACCCTGCTTCCCTGGAAAGGGTTCGCTGGCCAAATCCGG
AACCAGGGGAAAAATAAATGGCCCCCCCGAAAATTGAAAAAAACACAAGG
GTTTTTAAATTTTTTTATAAAAAAAAAAAGGTTTTTTGAAAAAACCCCCC
CCGGAAAAGAGGGAAAAACCCCGGGGGGGAAAAAATTTCCCCCCC
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