EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_PSEA7 (50S ribosomal protein L13 OS=Pseudomonas aeruginosa (strain PA7) GN=rplM PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.797e-20
Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            W V DA GQ LGRLA+++A  ++GK KP Y P+ D GD  +V+NA+ + VTG K  +K+YY H+G+ G +K    ++ + + P   I  AV  MLP+N           ++ G+ HP     P
Sbjct:   15 WFVVDAAGQTLGRLATEIARRLRGKHKPEYTPHVDTGDYIVVINAEQVRVTGAKTTDKMYYHHSGFPGGIKSINFEKLIAKAPERVIETAVKGMLPKNPLGRDMYRKLKVYKGANHPHTAQQP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_NEIG1 (50S ribosomal protein L13 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rplM PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.797e-20
Identity = 47/116 (40.52%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA+ +VLGR+A++VA+ ++GK KP Y P+ D GD  IV+NA  + VTG K ++K Y+ H+G+ G + ERT +E  ++ P  A+ +AV  MLP+            ++ G+EH
Sbjct:   15 WFVIDAQDKVLGRVATEVASRLRGKHKPEYTPHVDTGDYIIVINADKLRVTGAKFEDKKYFRHSGFPGGIYERTFREMQDQFPGRALEQAVKGMLPKGPLGYAMIKKLKVYAGAEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_COREF (50S ribosomal protein L13 OS=Corynebacterium efficiens GN=rplM PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.797e-20
Identity = 48/126 (38.10%), Postives = 69/126 (54.76%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*T 629
            +W V DA   VLGRLA+  A +++GK KP +APN D GD  I++NA  + +T  K   ++ Y H+GY G LK  TL   +E  P   + +++  M+P N           +F GSEHP+    P T
Sbjct:   14 KWYVIDATDVVLGRLATHAADLLRGKGKPLFAPNVDCGDHVIIINADKVAITSNKRDREMRYRHSGYPGGLKSMTLGRSLELHPERVLEESITGMMPHNKLTAASVKKLHVFAGSEHPYAAQKPET 139          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CELJU (50S ribosomal protein L13 OS=Cellvibrio japonicus (strain Ueda107) GN=rplM PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.797e-20
Identity = 46/117 (39.32%), Postives = 70/117 (59.83%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W + DA G+ LGRL++++A+ ++GK KP + P+ D GD  IV+NA  + VTG K  +KVYY HT + G +K  T  + +E+ P   I+ AV  MLP+            ++ G+EHP
Sbjct:   15 WFIVDAAGKTLGRLSAEIASRLRGKHKPEFTPHVDTGDYIIVINAAKVRVTGNKATDKVYYHHTNFAGGIKSITFDKLIEKAPERTIQTAVKGMLPKGPLGYAMFKKLKVYAGAEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_ANATD (50S ribosomal protein L13 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rplM PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.797e-20
Identity = 48/118 (40.68%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA G+ LGRLA+++A +++GK KP + PN D GD  IV+NA+ + +TG+KL    Y +HT Y G LK    +  +E+ P +AI  AV  MLP+N           ++ G  HP
Sbjct:   14 KWYVIDATGKPLGRLAAKIAVILRGKHKPQFTPNVDTGDYVIVINAEKVVLTGKKLDKDGYRYHTKYPGGLKFIPYRRLLEKHPEKAIEIAVRGMLPKNRLRDRFMRKLKVYRGPNHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_PROM2 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.571e-20
Identity = 47/117 (40.17%), Postives = 71/117 (60.68%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W + DAK + LGRLA+++AT+++GK+KPT+ P+ D GD  IV+NA+ + VTG+K   K+Y  H+G  G +K    +   ER P   I +AV  MLP N           ++ G++HP
Sbjct:   16 WFLVDAKNKTLGRLATEIATLLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKIEKFESLKERIPERIIEQAVKGMLPHNSLGRQQFKKLKVYKGADHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_PELLD (50S ribosomal protein L13 OS=Pelodictyon luteolum (strain DSM 273) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.571e-20
Identity = 45/124 (36.29%), Postives = 74/124 (59.68%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +W V DA+GQVLGR+A+++A V++GK KP + P+ D GD  +V NA+ + ++G K   K Y+ H+ Y G ++  ++K+ + + P + I  AV  MLP N           ++ G++HP    AP
Sbjct:   20 KWYVIDAEGQVLGRMAAEIARVLRGKHKPQFTPHVDTGDFIVVTNAEKVALSGNKENLKTYFSHSHYPGGVRVDSVKDLLRKKPEKIIEHAVWGMLPHNNLGRQLFRKLKVYAGTQHPHEAQAP 143          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_DEHE1 (50S ribosomal protein L13 OS=Dehalococcoides ethenogenes (strain 195) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.571e-20
Identity = 45/117 (38.46%), Postives = 66/117 (56.41%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA G+VLG +A++ A  + GK KP +  N D GD  +++NAK + VTG KL  K+YY H+G+ G  ++  L + ++  P   I  AV  M+PRN           ++ G EHP
Sbjct:   15 WHVIDASGRVLGEVAAEAAKYLMGKHKPMFCRNLDCGDYVVIINAKKVTVTGNKLDQKIYYRHSGFPGGFRQEKLGDLLKTKPLFVIEHAVKGMIPRNTLGAQILAKLKVYEGEEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CYAP4 (50S ribosomal protein L13 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.571e-20
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +W V DA  Q LGRLA+Q+A +++GK KP Y P+ D GD  IV+NA+ + VTG+K   K+Y  H+G  G +K  T  +   R P   I  AV  MLP+N           ++ G +HP     P
Sbjct:   15 KWYVVDATEQHLGRLATQIAMILRGKTKPIYTPSMDTGDFVIVVNAEKVAVTGKKRTQKIYRRHSGRPGGMKTETFAKLQSRLPERIIEHAVKGMLPKNTLGRNLFTKLKVYAGPDHPHQAQKP 138          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CALS8 (50S ribosomal protein L13 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.571e-20
Identity = 48/118 (40.68%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA G+ LGRLA+++A +++GK KP + PN D GD  IV+NA+ + +TG+KL    Y +HT Y G LK    +  +E+ P +AI  AV  MLP+N           ++ G  HP
Sbjct:   14 KWYVIDATGKPLGRLAAKIAVILRGKHKPQFTPNVDTGDYVIVVNAEKVVLTGKKLDKDGYRYHTKYPGGLKFIPYRRLLEKHPEKAIEIAVRGMLPKNRLRDRFMRKLKVYRGPNHP 131          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_PSEA75.797e-2038.2150S ribosomal protein L13 OS=Pseudomonas aeruginos... [more]
RL13_NEIG15.797e-2040.5250S ribosomal protein L13 OS=Neisseria gonorrhoeae... [more]
RL13_COREF5.797e-2038.1050S ribosomal protein L13 OS=Corynebacterium effic... [more]
RL13_CELJU5.797e-2039.3250S ribosomal protein L13 OS=Cellvibrio japonicus ... [more]
RL13_ANATD5.797e-2040.6850S ribosomal protein L13 OS=Anaerocellum thermoph... [more]
RL13_PROM27.571e-2040.1750S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_PELLD7.571e-2036.2950S ribosomal protein L13 OS=Pelodictyon luteolum ... [more]
RL13_DEHE17.571e-2038.4650S ribosomal protein L13 OS=Dehalococcoides ethen... [more]
RL13_CYAP47.571e-2039.5250S ribosomal protein L13 OS=Cyanothece sp. (strai... [more]
RL13_CALS87.571e-2040.6850S ribosomal protein L13 OS=Caldicellulosiruptor ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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