EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BIFLO (50S ribosomal protein L13 OS=Bifidobacterium longum GN=rplM PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.571e-20
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA   VLGRLA+Q A +++GK+KPTYAP+ D G+  I++NA  I +TG K+  K  Y H+G  G L+  +  E +E++P   I+ AV  MLP+N           IF G+EHP
Sbjct:   15 WYVIDATDVVLGRLATQAAILLRGKNKPTYAPHADSGNHVIIINADKIALTGNKM-GKELYSHSGRPGGLRRDSYAELLEKNPERIIKNAVKGMLPKNRLAKVQLDRLRIFRGAEHP 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BIFLI (50S ribosomal protein L13 OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.571e-20
Identity = 50/117 (42.74%), Postives = 71/117 (60.68%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA   VLGRLA+Q A +++GK+KPTYAP+ D G+  I++NA  I +TG K+  K  Y H+G  G L+  +  E +E++P   I+ AV  MLP+N           +F G+EHP
Sbjct:   15 WYVIDATDVVLGRLATQAAVLLRGKNKPTYAPHADSGNHVIIINADKIALTGNKM-GKELYSHSGRPGGLRRDSYAELLEKNPERIIKNAVKGMLPKNRLAKVQLDRLRVFRGAEHP 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BIFLD (50S ribosomal protein L13 OS=Bifidobacterium longum (strain DJO10A) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.571e-20
Identity = 51/117 (43.59%), Postives = 71/117 (60.68%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA   VLGRLA+Q A +++GK+KPTYAP+ D G+  I++NA  I +TG K+  K  Y H+G  G L+  +  E +E++P   I+ AV  MLP+N           IF G+EHP
Sbjct:   15 WYVIDATDVVLGRLATQAAILLRGKNKPTYAPHADSGNHVIIINADKIALTGNKM-GKELYSHSGRPGGLRRDSYAELLEKNPERIIKNAVKGMLPKNRLAKVQLDRLRIFRGAEHP 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_SILPO (50S ribosomal protein L13 OS=Silicibacter pomeroyi GN=rplM PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.888e-20
Identity = 52/125 (41.60%), Postives = 76/125 (60.80%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +W + DA+G VLGRLAS VA  ++GK K ++ P+ D GD  IV+NA  + +TG+K + + +YWHTG+ G +K RT ++ +E   P   + +AV RMLP N           I+ G+EHP    AP
Sbjct:   14 KWILIDAEGVVLGRLASIVAMRLRGKHKASFTPHMDMGDNVIVINADKVQITGKK-REEHFYWHTGHPGGIKSRTKQQILEGAHPERVVYQAVKRMLPGNRLSRQQMTNLRIYAGTEHPHEAQAP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_PROMT (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain NATL2A) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.888e-20
Identity = 48/118 (40.68%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+ Q LGRLA++VA+V++GK KP + P+ D GD  IV+NA+ I VTG+K   K+Y  H+G  G +K  T K    R P   + KA+  MLP             ++ GS+HP
Sbjct:   15 QWFLVDAENQTLGRLATEVASVLRGKTKPNFTPHLDTGDFVIVVNAEKIKVTGKKSDQKLYRRHSGRPGGMKVETFKALQSRIPERIVEKAIKGMLPHTRLGRQLFTKLKVYKGSDHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_PROMP (50S ribosomal protein L13 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.888e-20
Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W + DAK + LGRL++++A V++GK+KPT+ P+ D GD  IV+NA+ + VTG+K   K+Y  H+G  G +K    +   ER P   I +AV  MLP N           ++ GS+HP
Sbjct:   16 WFLVDAKDKTLGRLSTEIAAVLRGKNKPTFTPHLDTGDFVIVVNAEKVEVTGKKASQKLYRRHSGRPGGMKVEKFESLQERIPERIIEQAVKGMLPHNSLGRQQFKKLKVYKGSDHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_PROMM (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.888e-20
Identity = 48/128 (37.50%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TIR 635
            +W + DA+ Q LGRLA++VA+V++GK+KP++ P+ D GD  +V+NA  I V+G K   K+Y  H+G  G +K  T +   +R P   + KA+  MLP N           ++ G EHP     P T++
Sbjct:   15 QWFLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQKLYRRHSGRPGGMKVETFQALQDRLPERIVEKAIKGMLPHNALGRQLFRKLKVYRGPEHPHSAQRPQTLQ 142          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_PROM3 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.888e-20
Identity = 48/128 (37.50%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TIR 635
            +W + DA+ Q LGRLA++VA+V++GK+KP++ P+ D GD  +V+NA  I V+G K   K+Y  H+G  G +K  T +   +R P   + KA+  MLP N           ++ G EHP     P T++
Sbjct:   15 QWFLVDAENQTLGRLATEVASVLRGKNKPSFTPHLDTGDFVVVVNADKIRVSGNKANQKLYRRHSGRPGGMKVETFQALQDRLPERIVEKAIKGMLPHNALGRQLFRKLKVYRGPEHPHSAQRPQTLQ 142          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_PROM1 (50S ribosomal protein L13 OS=Prochlorococcus marinus (strain NATL1A) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.888e-20
Identity = 48/118 (40.68%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+ Q LGRLA++VA+V++GK KP + P+ D GD  IV+NA+ I VTG+K   K+Y  H+G  G +K  T K    R P   + KA+  MLP             ++ GS+HP
Sbjct:   15 QWFLVDAENQTLGRLATEVASVLRGKTKPNFTPHLDTGDFVIVVNAEKIKVTGKKSDQKLYRRHSGRPGGMKVETFKALQSRIPERIVEKAIKGMLPHTRLGRQLFTKLKVYKGSDHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_DEHSC (50S ribosomal protein L13 OS=Dehalococcoides sp. (strain CBDB1) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.888e-20
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA G+VLG +A++ A  + GK KP +  N D GD  +++NAK I VTG KL  K+YY H+G+ G  ++  L + ++  P   I  AV  M+PRN           ++ G+EHP
Sbjct:   15 WHVIDASGRVLGEVAAEAAKYLMGKHKPMFCRNLDCGDYVVIVNAKKITVTGNKLDQKMYYRHSGFPGGFRQEKLGDLLKTKPLFVIEHAVKGMIPRNTLGAQILAKLKVYEGAEHP 131          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_BIFLO7.571e-2043.5950S ribosomal protein L13 OS=Bifidobacterium longu... [more]
RL13_BIFLI7.571e-2042.7450S ribosomal protein L13 OS=Bifidobacterium longu... [more]
RL13_BIFLD7.571e-2043.5950S ribosomal protein L13 OS=Bifidobacterium longu... [more]
RL13_SILPO9.888e-2041.6050S ribosomal protein L13 OS=Silicibacter pomeroyi... [more]
RL13_PROMT9.888e-2040.6850S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_PROMP9.888e-2040.1750S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_PROMM9.888e-2037.5050S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_PROM39.888e-2037.5050S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_PROM19.888e-2040.6850S ribosomal protein L13 OS=Prochlorococcus marin... [more]
RL13_DEHSC9.888e-2039.3250S ribosomal protein L13 OS=Dehalococcoides sp. (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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