EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_DEHSB (50S ribosomal protein L13 OS=Dehalococcoides sp. (strain BAV1) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.888e-20
Identity = 46/117 (39.32%), Postives = 67/117 (57.26%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA G+VLG +A++ A  + GK KP +  N D GD  +++NAK I VTG KL  K+YY H+G+ G  ++  L + ++  P   I  AV  M+PRN           ++ G+EHP
Sbjct:   15 WHVIDASGRVLGEVAAEAAKYLMGKHKPMFCRNLDCGDYVVIVNAKKITVTGNKLDQKMYYRHSGFPGGFRQEKLGDLLKTKPLFVIEHAVKGMIPRNTLGAQILAKLKVYEGAEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CHLTE (50S ribosomal protein L13 OS=Chlorobium tepidum GN=rplM PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.888e-20
Identity = 43/117 (36.75%), Postives = 71/117 (60.68%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W + DA+ QVLGR+A+Q+A V++GK KP + P+ D GD  +V NA  + ++G+K  +K Y+ H+ Y G ++  ++K+ +++ P + I  AV  MLP N           ++ G EHP
Sbjct:   21 WHIIDAENQVLGRMAAQIANVLRGKHKPQFTPHIDTGDFVVVTNAAKVALSGKKRDDKTYFSHSHYPGGVRIDSVKDLLQKKPEKVIEHAVWGMLPHNNLGRQLFKKLKVYAGPEHP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_XANP2 (50S ribosomal protein L13 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 53/119 (44.54%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA G V+GRLA+ +A  ++GK  P Y P+ D GD  +V+NA+    TGRK   KVYY HTG+ G +KERT K  +E R P   I KAV RML R            ++ G  HP
Sbjct:   14 KWVVIDASGLVVGRLATIIAMRLKGKHLPIYTPHVDCGDNIVVVNAEKAVFTGRKKDQKVYYHHTGFPGGIKERTAKFVLEGRFPERVIEKAVERMLARGPLGRKIMGNLRVYKGPSHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_STAHJ (50S ribosomal protein L13 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 45/118 (38.14%), Postives = 72/118 (61.02%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA+GQ LGRL+S+VA++++GK+K TY P+ D GD  I++NA  I +TG+K  +K+YY H+ + G +K  T  E    +P   +  ++  MLP +           ++ G+EHP
Sbjct:   15 KWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIIINAAKIELTGKKESDKIYYRHSNHPGGIKSVTAGELKRNNPERLLETSIKGMLPSSRLGEKQGKKLFVYGGAEHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_SHEAM (50S ribosomal protein L13 OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA+G+ LGR+A+++A+ ++GK KP Y P+ D GD  IV+NA+ + VTG K   K+YY H+G+ G +KE   ++     P   I KAV  MLP+            ++ G+EH
Sbjct:   15 WYVVDAEGKTLGRIATEIASRLRGKHKPEYTPHVDTGDYIIVINAEKVTVTGNKAAGKMYYSHSGFPGGIKEINFEKLQAHKPEMIIEKAVKGMLPKGPLGRAMFRKLKVYAGAEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RICPR (50S ribosomal protein L13 OS=Rickettsia prowazekii GN=rplM PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 56/136 (41.18%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLK---NKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TIRDASS 647
            +W V DAK  VLGRLAS+VA +++GK KP++ P+ D GD  I++NA+ I +TG+KL     KVYY HTG+ G +K+ T  + +  + P   I+ AV RM+ RN           ++   EHP     P TI D +S
Sbjct:   14 KWWVIDAKNVVLGRLASRVAIMLRGKHKPSFTPHLDCGDNIIIINAEHIKLTGKKLNPKDGKVYYRHTGFPGGIKDTTAGKILSGKYPERVIKMAVKRMITRNVLGAKQMSNLYVYANCEHPHMAQQP-TIYDFAS 148          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCGI (50S ribosomal protein L13 OS=Mycobacterium gilvum (strain PYR-GCK) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 47/123 (38.21%), Postives = 67/123 (54.47%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            W V DA   VLGRLA + A +++GK KPT+ PN D GD  I++NA  I ++G KL  K  Y H+GY G L++R + + + + PT  +  A+  MLP             ++ G EHP     P
Sbjct:   15 WYVIDATDVVLGRLAVEAAKLLRGKHKPTFTPNVDGGDFVIIINADKISLSGDKLTKKFAYSHSGYPGGLRKRAIGDLLAKHPTRVVENAITGMLPHTKLGRQIQKKLKVYAGPEHPHTAQQP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MACCJ (50S ribosomal protein L13 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 43/124 (34.68%), Postives = 76/124 (61.29%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            +W V DA+G+ +GRL+S+VA++++GK KPT+ P+ D GD  I++NA+ I ++G K ++K+YY H+ + G +K  +  E  E++P   +  ++  MLP+            ++ G+EHP     P
Sbjct:   15 KWYVIDAEGKTMGRLSSEVASILRGKHKPTFTPHVDCGDHVILINAEKIYLSGNKAEDKIYYRHSNHPGGIKSISAGELREKNPVRLMETSIKGMLPKGSLGDKMFKKLHVYAGAEHPHTAQQP 138          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HELPS (50S ribosomal protein L13 OS=Helicobacter pylori (strain Shi470) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DAK +V GRL +++A +++GK +P Y PN D GD  +V+NA  +  +G KL++K Y+ H+GY G  K +TL+E +E+ P +    AV  MLP+            ++   +HP
Sbjct:   14 WVVLDAKDKVFGRLITEIAVLLRGKHRPFYTPNVDCGDFVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKTPEKLYHLAVRGMLPKTKLGKAMIKKLKVYRDDKHP 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HELPJ (50S ribosomal protein L13 OS=Helicobacter pylori J99 GN=rplM PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DAK +V GRL +++A +++GK +P Y PN D GD  +V+NA  +  +G KL++K Y+ H+GY G  K +TL+E +E+ P +    AV  MLP+            ++   +HP
Sbjct:   14 WVVLDAKDKVFGRLITEIAVLLRGKHRPFYTPNVDCGDFVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKTPEKLYHLAVRGMLPKTKLGKAMIKKLKVYRDDKHP 130          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_DEHSB9.888e-2039.3250S ribosomal protein L13 OS=Dehalococcoides sp. (... [more]
RL13_CHLTE9.888e-2036.7550S ribosomal protein L13 OS=Chlorobium tepidum GN... [more]
RL13_XANP21.291e-1944.5450S ribosomal protein L13 OS=Xanthobacter autotrop... [more]
RL13_STAHJ1.291e-1938.1450S ribosomal protein L13 OS=Staphylococcus haemol... [more]
RL13_SHEAM1.291e-1939.6650S ribosomal protein L13 OS=Shewanella amazonensi... [more]
RL13_RICPR1.291e-1941.1850S ribosomal protein L13 OS=Rickettsia prowazekii... [more]
RL13_MYCGI1.291e-1938.2150S ribosomal protein L13 OS=Mycobacterium gilvum ... [more]
RL13_MACCJ1.291e-1934.6850S ribosomal protein L13 OS=Macrococcus caseolyti... [more]
RL13_HELPS1.291e-1937.6150S ribosomal protein L13 OS=Helicobacter pylori (... [more]
RL13_HELPJ1.291e-1937.6150S ribosomal protein L13 OS=Helicobacter pylori J... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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