EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HELPH (50S ribosomal protein L13 OS=Helicobacter pylori (strain HPAG1) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DAK +V GRL +++A +++GK +P Y PN D GD  +V+NA  +  +G KL++K Y+ H+GY G  K +TL+E +E+ P +    AV  MLP+            ++   +HP
Sbjct:   14 WVVLDAKDKVFGRLITEIAVLLRGKHRPFYTPNVDCGDFVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKTPEKLYHLAVRGMLPKTKLGKAMIKKLKVYRDDKHP 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HELPG (50S ribosomal protein L13 OS=Helicobacter pylori (strain G27) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DAK +V GRL +++A +++GK +P Y PN D GD  +V+NA  +  +G KL++K Y+ H+GY G  K +TL+E +E+ P +    AV  MLP+            ++   +HP
Sbjct:   14 WVVLDAKDKVFGRLITEIAVLLRGKHRPFYTPNVDCGDFVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKTPEKLYHLAVRGMLPKTKLGKAMIKKLKVYRDDKHP 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HELAH (50S ribosomal protein L13 OS=Helicobacter acinonychis (strain Sheeba) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DAK +V GRL +++A +++GK +P Y PN D GD  +V+NA  +  +G KL++K Y+ H+GY G  K +TL+E +E+ P +    AV  MLP+            ++   +HP
Sbjct:   14 WVVLDAKDKVFGRLITEIAVLLRGKHRPFYTPNVDCGDFVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKTPEKLYHLAVRGMLPKTKLGKAMIKKLKVYRDDKHP 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HAHCH (50S ribosomal protein L13 OS=Hahella chejuensis (strain KCTC 2396) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 47/123 (38.21%), Postives = 70/123 (56.91%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            W V DA  + LGRL++++A  ++GK K  Y P+ D GD  +V+NA+ + VTG K ++K+YY HTGY G LKE +  + ++  P   I  AV  M+PRN           ++  +EHP     P
Sbjct:   15 WYVIDATDKTLGRLSTEIARRLRGKHKAEYTPHVDTGDYIVVVNAEKVRVTGNKAQDKMYYRHTGYPGGLKEMSFDKLIQHAPERVIETAVKGMMPRNPLGRAMLKKLKVYASAEHPHTAQQP 137          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BUCBP (50S ribosomal protein L13 OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rplM PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 48/116 (41.38%), Postives = 67/116 (57.76%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W   DA G++LGRLA+ +A+ ++GK K  Y P+ D GD  IV+NAK+I VTG+K  +K YY HTGY+G LK+   K+ + R P   I  AV  MLP+            ++    H
Sbjct:   17 WYCIDATGKILGRLATNIASRLRGKHKVEYTPHVDIGDYLIVINAKNIKVTGKKCTDKFYYHHTGYVGGLKKIAFKDMLHRYPERIIEIAVRGMLPKGPLGRSMFKKLKVYANDNH 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_ARCB4 (50S ribosomal protein L13 OS=Arcobacter butzleri (strain RM4018) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 43/117 (36.75%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA  +V GR+ ++VAT+++GK+KP + PN D GD  +++NA     +G+KL++K Y+ H+GY G  K   + E  E++P +  + A   MLP+            ++ GSEHP
Sbjct:   16 WIVVDATDKVFGRIITEVATILRGKNKPCFTPNVDCGDFVVIINASKAKFSGKKLESKNYFTHSGYFGSTKTHKMSEMFEKNPEKLYKLATRGMLPKTTLGKEMLKKLKVYAGSEHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_ACIAD (50S ribosomal protein L13 OS=Acinetobacter sp. (strain ADP1) GN=rplM PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.291e-19
Identity = 45/117 (38.46%), Postives = 70/117 (59.83%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA G+ LGRLA+++A  ++GK K +Y P+ D GD  +V+NA+ + VTG+K  +K YY HTG+ G ++E   ++ +   P   + KAV  MLP+            ++ G+EHP
Sbjct:   15 WYVVDASGKTLGRLATEIARRLRGKHKTSYTPHVDTGDYIVVINAEQVQVTGKKSLDKKYYRHTGFPGGIRETNFEKLIAHKPEAVLEKAVKGMLPKGPLGYAMIKKMKVYAGTEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_STAAW (50S ribosomal protein L13 OS=Staphylococcus aureus (strain MW2) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 48/118 (40.68%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA+GQ LGRL+S+VA++++GK+K TY P+ D GD  IV+NA  I  TG K  +KVYY H+ + G +K  T  E    +P   I  ++  MLP             ++ G+EHP
Sbjct:   15 KWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLPSTRLGEKQGKKLFVYGGAEHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_STAAT (50S ribosomal protein L13 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 48/118 (40.68%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA+GQ LGRL+S+VA++++GK+K TY P+ D GD  IV+NA  I  TG K  +KVYY H+ + G +K  T  E    +P   I  ++  MLP             ++ G+EHP
Sbjct:   15 KWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLPSTRLGEKQGKKLFVYGGAEHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_STAAS (50S ribosomal protein L13 OS=Staphylococcus aureus (strain MSSA476) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 48/118 (40.68%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA+GQ LGRL+S+VA++++GK+K TY P+ D GD  IV+NA  I  TG K  +KVYY H+ + G +K  T  E    +P   I  ++  MLP             ++ G+EHP
Sbjct:   15 KWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLPSTRLGEKQGKKLFVYGGAEHP 132          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_HELPH1.291e-1937.6150S ribosomal protein L13 OS=Helicobacter pylori (... [more]
RL13_HELPG1.291e-1937.6150S ribosomal protein L13 OS=Helicobacter pylori (... [more]
RL13_HELAH1.291e-1937.6150S ribosomal protein L13 OS=Helicobacter acinonyc... [more]
RL13_HAHCH1.291e-1938.2150S ribosomal protein L13 OS=Hahella chejuensis (s... [more]
RL13_BUCBP1.291e-1941.3850S ribosomal protein L13 OS=Buchnera aphidicola s... [more]
RL13_ARCB41.291e-1936.7550S ribosomal protein L13 OS=Arcobacter butzleri (... [more]
RL13_ACIAD1.291e-1938.4650S ribosomal protein L13 OS=Acinetobacter sp. (st... [more]
RL13_STAAW1.687e-1940.6850S ribosomal protein L13 OS=Staphylococcus aureus... [more]
RL13_STAAT1.687e-1940.6850S ribosomal protein L13 OS=Staphylococcus aureus... [more]
RL13_STAAS1.687e-1940.6850S ribosomal protein L13 OS=Staphylococcus aureus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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