EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_STAA1 (50S ribosomal protein L13 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 48/118 (40.68%), Postives = 69/118 (58.47%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA+GQ LGRL+S+VA++++GK+K TY P+ D GD  IV+NA  I  TG K  +KVYY H+ + G +K  T  E    +P   I  ++  MLP             ++ G+EHP
Sbjct:   15 KWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHVDTGDYVIVINASKIEFTGNKETDKVYYRHSNHPGGIKSITAGELRRTNPERLIENSIKGMLPSTRLGEKQGKKLFVYGGAEHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RICTY (50S ribosomal protein L13 OS=Rickettsia typhi GN=rplM PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 55/136 (40.44%), Postives = 81/136 (59.56%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKN---KVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TIRDASS 647
            +W V DAK  VLGRLAS+VA +++GK KP++ P+ D GD  I++NA+ I +TG+KL +   KVYY HTG+ G +K+ T  + +  + P   I+ AV RM+ RN           ++   EHP     P T+ D +S
Sbjct:   14 KWWVIDAKNIVLGRLASRVAIMLRGKHKPSFTPHLDCGDNIIIINAEHIKLTGKKLNHKDGKVYYRHTGFPGGIKDTTAGKILSGKYPERVIKMAVKRMITRNVLGAKQMSNLYVYANCEHPHMAQQP-TVYDFAS 148          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RICBR (50S ribosomal protein L13 OS=Rickettsia bellii (strain RML369-C) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 50/122 (40.98%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLK---NKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DAK  VLGRLAS+VA +++GK KP++ P+ D GD  I++NA+ + +TG+K      K+YY HTG+ G +K+ T  + +  + P   I+ AV RM+ RN           I+  SEHP
Sbjct:   14 KWWVIDAKNVVLGRLASRVANMLRGKHKPSFTPHMDCGDNIIIINAEHVTLTGKKANPKDGKIYYRHTGFPGGIKDTTAGKILSGKHPERVIKMAVKRMITRNALGAKQMSNLYIYANSEHP 135          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RICB8 (50S ribosomal protein L13 OS=Rickettsia bellii (strain OSU 85-389) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 50/122 (40.98%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLK---NKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DAK  VLGRLAS+VA +++GK KP++ P+ D GD  I++NA+ + +TG+K      K+YY HTG+ G +K+ T  + +  + P   I+ AV RM+ RN           I+  SEHP
Sbjct:   14 KWWVIDAKNVVLGRLASRVANMLRGKHKPSFTPHMDCGDNIIIINAEHVTLTGKKANPKDGKIYYRHTGFPGGIKDTTAGKILSGKHPERVIKMAVKRMITRNALGAKQMSNLYIYANSEHP 135          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HELPY (50S ribosomal protein L13 OS=Helicobacter pylori GN=rplM PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DAK +V GRL +++A +++GK +P Y PN D GD  +V+NA  +  +G KL++K Y+ H+GY G  K +TL+E +E+ P +    AV  MLP+            ++   +HP
Sbjct:   14 WVVLDAKDKVFGRLITEIAVLLRGKHRPFYTPNVDCGDFVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKAPEKLYHLAVRGMLPKTKLGKAMIKKLKVYRDDKHP 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_HELP2 (50S ribosomal protein L13 OS=Helicobacter pylori (strain P12) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DAK +V GRL +++A +++GK +P Y PN D GD  +V+NA  +  +G KL++K Y+ H+GY G  K +TL+E +E+ P +    AV  MLP+            ++   +HP
Sbjct:   14 WVVLDAKDKVFGRLITEIAVLLRGKHRPFYTPNVDCGDFVVVINANKVKFSGMKLEDKEYFTHSGYFGSTKSKTLQEMLEKAPEKLYHLAVRGMLPKTKLGKAMIKKLKVYRDDKHP 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_DEIRA (50S ribosomal protein L13 OS=Deinococcus radiodurans GN=rplM PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 46/117 (39.32%), Postives = 66/117 (56.41%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA G  LGRLA+ +A+ ++GK +P + PN   GD  +V+NA  + +TG+KL +KVY  +TGY G LK  T +E + + P   I  AV  MLP+            ++ G  HP
Sbjct:   41 WVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAREALSKHPERVIEHAVFGMLPKGRQGRAMHTRLKVYAGETHP 157          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CLOK5 (50S ribosomal protein L13 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 47/117 (40.17%), Postives = 72/117 (61.54%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            +W V DA G+ LGR+ASQVA+V++GK KP + P+ D GD  IV+N++ + +TG+KL  K+   H+ Y G LKE   +E + + P    ++AV RMLP+            ++ G+EH
Sbjct:   14 KWYVVDAAGKPLGRVASQVASVLRGKHKPIFTPHVDTGDFVIVINSEKVLLTGKKLDQKMLRHHSLYPGGLKETPYREALNKKPEFVFQEAVRRMLPKGVLGRKMLKKLKVYRGTEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CLOK1 (50S ribosomal protein L13 OS=Clostridium kluyveri (strain NBRC 12016) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 47/117 (40.17%), Postives = 72/117 (61.54%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            +W V DA G+ LGR+ASQVA+V++GK KP + P+ D GD  IV+N++ + +TG+KL  K+   H+ Y G LKE   +E + + P    ++AV RMLP+            ++ G+EH
Sbjct:   14 KWYVVDAAGKPLGRVASQVASVLRGKHKPIFTPHVDTGDFVIVINSEKVLLTGKKLDQKMLRHHSLYPGGLKETPYREALNKKPEFVFQEAVRRMLPKGVLGRKMLKKLKVYRGTEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CHLCH (50S ribosomal protein L13 OS=Chlorobium chlorochromatii (strain CaD3) GN=rplM PE=3 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 46/123 (37.40%), Postives = 70/123 (56.91%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            W V DA+G VLGR+AS++A V++GK KP + P+ D GD  +V NA+ + +TGRK + K Y+ H+ Y G ++   +K+ +   P   I  AV  MLP N           ++ G+ HP    +P
Sbjct:   21 WYVIDAEGLVLGRMASEIAKVLRGKHKPQFTPHIDTGDFIVVTNAEKVLLTGRKSEQKTYFTHSHYPGGVRIDEVKDVIRTKPERVIENAVWGMLPHNNLGRQLFRKLKVYAGTNHPHASQSP 143          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_STAA11.687e-1940.6850S ribosomal protein L13 OS=Staphylococcus aureus... [more]
RL13_RICTY1.687e-1940.4450S ribosomal protein L13 OS=Rickettsia typhi GN=r... [more]
RL13_RICBR1.687e-1940.9850S ribosomal protein L13 OS=Rickettsia bellii (st... [more]
RL13_RICB81.687e-1940.9850S ribosomal protein L13 OS=Rickettsia bellii (st... [more]
RL13_HELPY1.687e-1937.6150S ribosomal protein L13 OS=Helicobacter pylori G... [more]
RL13_HELP21.687e-1937.6150S ribosomal protein L13 OS=Helicobacter pylori (... [more]
RL13_DEIRA1.687e-1939.3250S ribosomal protein L13 OS=Deinococcus radiodura... [more]
RL13_CLOK51.687e-1940.1750S ribosomal protein L13 OS=Clostridium kluyveri ... [more]
RL13_CLOK11.687e-1940.1750S ribosomal protein L13 OS=Clostridium kluyveri ... [more]
RL13_CHLCH1.687e-1937.4050S ribosomal protein L13 OS=Chlorobium chlorochro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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