EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BLOPB (50S ribosomal protein L13 OS=Blochmannia pennsylvanicus (strain BPEN) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W + DAK ++LGRL++ ++  + GK K  YAP+ D GD  IVLNAK++ V+G K  +K+YY HTGYIG +K+   K  + R P + I  AV  MLP+            ++ G+ H
Sbjct:   15 WYIIDAKHKILGRLSTVISRYLIGKHKIEYAPHVDIGDYVIVLNAKEVSVSGHKRDDKIYYHHTGYIGGIKQLNFKRMINRYPEKVIEIAVKGMLPKGPLGRMMYCRLRVYSGNVH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_BIFAA (50S ribosomal protein L13 OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.687e-19
Identity = 50/118 (42.37%), Postives = 71/118 (60.17%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPF 608
            W V DA   VLGRLA+Q AT+++GK+KPTYAP+ D G+  I+LNA  I +TG KL  K  Y H+G  G L+  +  + ++ +P   I+ A+  MLP+N           I  G+EHP+
Sbjct:   15 WYVIDATDVVLGRLATQAATLLRGKNKPTYAPHADSGNHVIILNADKIALTGNKL-GKELYMHSGRPGGLRRDSYAQLLKTNPERIIKSAIKGMLPKNRLAKVQLDRLHIVRGAEHPY 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_THEEB (50S ribosomal protein L13 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 51/129 (39.53%), Postives = 72/129 (55.81%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPF--WRPAP*TI 632
            +W V DA  Q LGRLA+++A +++GK+K  Y P+ D GD  IV+NA+ + VTG+K   K+Y  H+G  G +K  T  +   R P   I  AV  MLP+N           ++ G EHP    +P P TI
Sbjct:   18 QWYVIDAADQRLGRLAAEIARILRGKNKAIYTPHMDTGDFVIVINAEKVTVTGKKRSQKLYRRHSGRPGGMKIETFDQLQARIPERIIEHAVKGMLPKNSLGRKLFTKLKVYAGPEHPHQAQKPQPLTI 146          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_SHEB8 (50S ribosomal protein L13 OS=Shewanella baltica (strain OS185) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 46/116 (39.66%), Postives = 69/116 (59.48%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            W V DA G+ LGR+A+++A  ++GK KP Y P+ D GD  IV+NA+ + VTG K K K YY H+G+ G +K+ + ++   + P   I KAV  MLP+            ++ G+EH
Sbjct:   15 WFVVDADGKTLGRIATEIAIRLRGKHKPEYTPHVDTGDYIIVVNAEKVTVTGNKAKGKTYYSHSGFPGGIKQISFEKLQAQKPEMIIEKAVKGMLPKGPLGRAMFRKLKVYAGAEH 130          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_NITMU (50S ribosomal protein L13 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 52/134 (38.81%), Postives = 74/134 (55.22%), Query Frame = 3
Query:  204 MKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            MK   A    +N E   W V DA G+VLGRLA+++A  ++GK KP Y P+ D GD  +V+N   + VTG K ++K+YY H+GY G + E +  +   R P   + KAV  MLP+            I+ G+ HP
Sbjct:    1 MKTFSAKPHEVNRE---WFVIDAAGKVLGRLAAEIAHRLRGKHKPIYTPHVDTGDFIVVINVDKMRVTGNKAESKMYYRHSGYPGGIYETSFAKMHARFPGRPLEKAVKGMLPKGPLGYAMLKKLKIYAGAAHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_NITEC (50S ribosomal protein L13 OS=Nitrosomonas eutropha (strain C91) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 49/117 (41.88%), Postives = 66/117 (56.41%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA  +VLGRLA+ +A  ++GK KP Y P+ D GD  +V+N   + VTG K ++K+YY H+GY G L E T K+   R P   + KAV  MLP+            I+ G  HP
Sbjct:   15 WFVVDATDKVLGRLAAAIAHRLRGKHKPIYTPHVDTGDYIVVINVDKLRVTGNKAEDKIYYRHSGYPGGLYETTFKKMHARFPARPLEKAVKGMLPKGPLGYAMIKKLKIYAGDIHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCHJ (50S ribosomal protein L13 OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 45/118 (38.14%), Postives = 71/118 (60.17%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA+ ++LGRLA+ VA+ ++GK  P + PN D GD  I++NA+ I +T +K + K+YY H+GY G L+ RT +E   + P   + +A+  M+P             ++ GSEHP
Sbjct:   15 KWFVIDAESKILGRLAAFVASRLRGKHYPHFTPNVDMGDKIIIINAEKILLTAKKEEQKLYYNHSGYPGGLRVRTAREMRAKKPIALLERAIYGMIPHTKLGDKQRKNLYVYSGSEHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCH7 (50S ribosomal protein L13 OS=Mycoplasma hyopneumoniae (strain 7448) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 45/118 (38.14%), Postives = 71/118 (60.17%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA+ ++LGRLA+ VA+ ++GK  P + PN D GD  I++NA+ I +T +K + K+YY H+GY G L+ RT +E   + P   + +A+  M+P             ++ GSEHP
Sbjct:   15 KWFVIDAESKILGRLAAFVASRLRGKHYPHFTPNVDMGDKIIIINAEKILLTAKKEEQKLYYNHSGYPGGLRVRTAREMRAKKPIALLERAIYGMIPHTKLGDKQRKNLYVYSGSEHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CORDI (50S ribosomal protein L13 OS=Corynebacterium diphtheriae GN=rplM PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*T 629
            +W V DA   VLGRLA+  A +++GK KP +APN D GD  IV+NA  + V+  K + ++ Y H+GY G LK  TL   +E  P   + +++  M+P N           +F GSEHP+    P T
Sbjct:   14 KWYVIDATDVVLGRLATHAADLLRGKGKPQFAPNVDCGDHVIVINADKVHVSSNKREREMRYRHSGYPGGLKTMTLGRSLEVHPERVVEESIRGMMPHNRLSRASVKKLHVFAGSEHPYAAQKPET 139          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_CHLPD (50S ribosomal protein L13 OS=Chlorobium phaeobacteroides (strain DSM 266) GN=rplM PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.203e-19
Identity = 46/117 (39.32%), Postives = 70/117 (59.83%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA GQVLGR+A+++A V++GK KP + P+ D GD  +V NA  I ++G+K + K Y+ H+ Y G +K   +K+ +++ P + I  AV  MLP N           ++ G EHP
Sbjct:   21 WYVIDADGQVLGRMAAEIARVLRGKHKPQFTPHIDTGDFIVVTNAAKIGLSGKKTEQKSYFSHSNYPGGVKFDHVKDLLKKKPEKIIEHAVWGMLPHNNLGRQLFKKLKVYAGPEHP 137          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_BLOPB1.687e-1940.5250S ribosomal protein L13 OS=Blochmannia pennsylva... [more]
RL13_BIFAA1.687e-1942.3750S ribosomal protein L13 OS=Bifidobacterium adole... [more]
RL13_THEEB2.203e-1939.5350S ribosomal protein L13 OS=Thermosynechococcus e... [more]
RL13_SHEB82.203e-1939.6650S ribosomal protein L13 OS=Shewanella baltica (s... [more]
RL13_NITMU2.203e-1938.8150S ribosomal protein L13 OS=Nitrosospira multifor... [more]
RL13_NITEC2.203e-1941.8850S ribosomal protein L13 OS=Nitrosomonas eutropha... [more]
RL13_MYCHJ2.203e-1938.1450S ribosomal protein L13 OS=Mycoplasma hyopneumon... [more]
RL13_MYCH72.203e-1938.1450S ribosomal protein L13 OS=Mycoplasma hyopneumon... [more]
RL13_CORDI2.203e-1938.8950S ribosomal protein L13 OS=Corynebacterium dipht... [more]
RL13_CHLPD2.203e-1939.3250S ribosomal protein L13 OS=Chlorobium phaeobacte... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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