EY744219

Overview
NameEY744219
Unique NameEY744219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_TREDE (50S ribosomal protein L13 OS=Treponema denticola GN=rplM PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.877e-19
Identity = 42/117 (35.90%), Postives = 71/117 (60.68%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W + DA G+ LGR+A++ A +++GK K ++AP+++ GD  +++NA+ + VTG K K+K+YY H+GY+G LK       + + P E +  A+  MLP+            ++ G EHP
Sbjct:   15 WYLIDAAGKPLGRVAAKTAAMLRGKHKVSFAPHQEIGDYVVIINAEKVAVTGNKAKDKMYYTHSGYVGGLKSINFNGLIAKKPAEPLMIAIKGMLPKGPLGRKLLTNVKVYAGPEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_MYCMO (50S ribosomal protein L13 OS=Mycoplasma mobile GN=rplM PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.877e-19
Identity = 48/117 (41.03%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEH 602
            +W V DA+GQVLGRLAS VA+ ++GK+KPT+ PN D GD  IV+NA  + +T +K  +K+YY  +GY G LK    ++   + P   + KAV  M+P             ++ G EH
Sbjct:   15 KWFVVDAEGQVLGRLASVVASYLRGKNKPTFTPNVDMGDNIIVINADKVVLTAKKEDDKIYYSSSGYNGGLKAINARDLRAKKPFALVEKAVKGMIPHTKLGRKQFGNLYVYAGREH 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_DEIDV (50S ribosomal protein L13 OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=rplM PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.877e-19
Identity = 48/126 (38.10%), Postives = 68/126 (53.97%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TI 632
            W V DA G  LGRLA+ +A+ ++GK +P + PN   GD  +VLNA+ + +TG KL  KVY  +TGY G L+  T +E + + P   I  AV  MLP+            ++ G  HP     P T+
Sbjct:   13 WVVVDAAGVPLGRLATLIASRIRGKHRPDFTPNLIQGDFVVVLNAEKVALTGNKLDGKVYTRYTGYQGGLRTETAREALAKHPERVIEHAVFGMLPKGRQGRSMHNRLKVYAGETHPHTAQKPQTL 138          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_WOLTR (50S ribosomal protein L13 OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=rplM PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 54/132 (40.91%), Postives = 74/132 (56.06%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP*TIRDAS 644
            +W V +A+G V+GRLA+ VAT+++GK KP Y P+ D GD  I++NA+ +  TG+K K KVYY HTGY G LK+ T    +  + P   I+ AV RML              ++ G EH      P  I  AS
Sbjct:   14 KWFVINAEGLVVGRLAAFVATLLRGKHKPEYTPHMDCGDNIIIINAEKVHFTGKKFKEKVYYKHTGYPGGLKKTTPNNVLNGKFPERVIKMAVKRMLDDGPMARKRFGNLYVYSGPEHKHQGQQPKKIDFAS 145          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_THET8 (50S ribosomal protein L13 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rplM PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 46/124 (37.10%), Postives = 73/124 (58.87%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            RW + DA+G+ LGRLA+++AT+++GK +P + PN   GD  +V+NA  I VTG+KL+ K+Y  ++GY G LK+  L++ +   P   +  AV  MLP+            ++ G +HP     P
Sbjct:   12 RWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRP 135          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_THET2 (50S ribosomal protein L13 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rplM PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 46/124 (37.10%), Postives = 73/124 (58.87%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHPFWRPAP 623
            RW + DA+G+ LGRLA+++AT+++GK +P + PN   GD  +V+NA  I VTG+KL+ K+Y  ++GY G LK+  L++ +   P   +  AV  MLP+            ++ G +HP     P
Sbjct:   12 RWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPLEKMLATHPERVLEHAVKGMLPKGPLGRRLFKRLKVYAGPDHPHQAQRP 135          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_SYNFM (50S ribosomal protein L13 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplM PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W + DA+ QVLGRLAS++A  ++GK  P + P+ D GD  +V+NA  + +TG K   K+YY H+GY+G +K ++ ++    +P + +R AV  MLP+N           ++ G+EHP
Sbjct:   14 KWILVDAENQVLGRLASRIAMRLRGKHLPAFTPHVDLGDFVVVINADKVQLTGNKWDQKLYYRHSGYMGGVKVQSARKLNAGNPEKLLRLAVWGMLPKNRLGRKLIKKLKVYKGAEHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_STRAW (50S ribosomal protein L13 OS=Streptomyces avermitilis GN=rplM PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 44/118 (37.29%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA+  VLGRLA+  A +++GK KP YAP+ D GD  I++NA  + ++G K   K+ Y H+GY G L+     E + ++P +A+ KA+  M+P+N           ++ G +HP
Sbjct:   14 QWYVIDAQDVVLGRLATTAANILRGKHKPIYAPHVDAGDFVIIINADKVHLSGNKKTQKLAYRHSGYPGGLRSVRYDELLAKNPEKAVEKAIKGMIPKNTLGRQVLSKLKVYSGDQHP 131          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RHORT (50S ribosomal protein L13 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplM PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 47/119 (39.50%), Postives = 71/119 (59.66%), Query Frame = 3
Query:  252 RWRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQME-RDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            +W V DA+G VLGRLA  +A +++GK+K  Y P+ D GD  +V+NA+ + +TG K  N+ ++WHTG+ G +K R+L +  +   P   I KAV RM+PR            ++ G  HP
Sbjct:   14 KWYVIDAEGVVLGRLAVIIADLLRGKNKTIYTPHIDTGDHVVVINAEKVHLTGNKAANERFFWHTGHPGGIKSRSLGQIRDGAHPERLIEKAVERMMPRGPLARAQFKKLRVYGGEAHP 132          
BLAST of EY744219 vs. ExPASy Swiss-Prot
Match: RL13_RALME (50S ribosomal protein L13 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rplM PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.758e-19
Identity = 48/117 (41.03%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  255 WRVFDAKGQVLGRLASQVATVVQGKDKPTYAPNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAVLRMLPRNXXXXXXXXXXXIFPGSEHP 605
            W V DA  +VLGR+AS+VA  ++GK KP + P+ D GD  I++NA  + VTG K ++K YY H+GY G + E T  +  +R P  A+ KAV  MLP+            ++  +EHP
Sbjct:   15 WYVIDATDKVLGRVASEVARRLRGKHKPEFTPHVDTGDFIIIVNAAKLRVTGTKEQDKKYYRHSGYPGGIYETTFGKMQQRFPGRALEKAVKGMLPKGPLGYAMIKKLKVYAEAEHP 131          
The following BLAST results are available for this feature:
BLAST of EY744219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL13_TREDE2.877e-1935.9050S ribosomal protein L13 OS=Treponema denticola G... [more]
RL13_MYCMO2.877e-1941.0350S ribosomal protein L13 OS=Mycoplasma mobile GN=... [more]
RL13_DEIDV2.877e-1938.1050S ribosomal protein L13 OS=Deinococcus deserti (... [more]
RL13_WOLTR3.758e-1940.9150S ribosomal protein L13 OS=Wolbachia sp. subsp. ... [more]
RL13_THET83.758e-1937.1050S ribosomal protein L13 OS=Thermus thermophilus ... [more]
RL13_THET23.758e-1937.1050S ribosomal protein L13 OS=Thermus thermophilus ... [more]
RL13_SYNFM3.758e-1938.1450S ribosomal protein L13 OS=Syntrophobacter fumar... [more]
RL13_STRAW3.758e-1937.2950S ribosomal protein L13 OS=Streptomyces avermiti... [more]
RL13_RHORT3.758e-1939.5050S ribosomal protein L13 OS=Rhodospirillum rubrum... [more]
RL13_RALME3.758e-1941.0350S ribosomal protein L13 OS=Ralstonia metallidura... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-C01-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744219 ID=EY744219; Name=EY744219; organism=Citrus sinensis; type=EST; length=820bp
ATAAACCATACTCTTAGGGTTTACGCAGGGCCATCTCTAACTTTTGTTAT
TATTATTATTTGAATGTCCTTTACTTTTGATTTTGGGTTGTAATTTGAAT
ATAGCTCTGAATTTGATTTGCGTTACTCATTTTTGTTTAAAAGAAGTTAT
AACAGAGCAATAGAAAAATGGCAAACCAAGCAGCCACAGCTTTCAGTGGC
AACATGAAGAAAGCGCTTGCTGGGCTGAGGCGAATCAATCTAGAAGGTCT
ACGATGGAGAGTTTTTGATGCTAAAGGCCAGGTCCTTGGGAGATTAGCAT
CTCAGGTAGCTACTGTCGTTCAAGGCAAGGATAAGCCTACGTACGCTCCT
AATCGTGATGATGGTGATATGTGCATTGTGCTTAATGCAAAAGATATATG
TGTTACTGGGAGGAAACTTAAAAATAAGGTTTACTACTGGCATACCGGGT
ATATAGGCCACCTCAAGGAAAGGACCTTAAAAGAACAGATGGAGAGGGAC
CCTACAGAAGCCATTCGTAAAGCTGTCTTACGCATGCTTCCAAGAAATAA
ATTACGTGATGATAGAGATCGAAAACTGAGGATTTTTCCTGGAAGCGAGC
ACCCTTTTTGGCGACCGGCCCCCTGAACCATACGTGATGCCTCCTCGACG
TGGTAGAGAACTGCGACCTCGGGTTAGAAGAGCCATGATTAAAAGAACAA
AAAAAGGCGGAAAAGCAGCCAAATAACCAGGGATTGAGGAAAAACAAAAA
GAAAAAATTTGAAAACAAAATGGCTGGCCTGAAAATTTTGGTGGGGGCCC
CTTTTGGTTTTGAAAAGGGA
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