EY744217

Overview
NameEY744217
Unique NameEY744217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_BRADI (50S ribosomal protein L16, chloroplastic OS=Brachypodium distachyon GN=rpl16 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.303e-12
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M GK+ RGN ICFGRYALQ L  P      QIE G +A+ R  + RG K WVRIFP+K
Sbjct:    3 SPKRTKFRKQHRGRMKGKSCRGNRICFGRYALQALE-PTWITARQIEAGRRAITRYAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_WHEAT (50S ribosomal protein L16, chloroplastic OS=Triticum aestivum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.538e-12
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M GK+ RGN ICFGRYALQ L  P      QIE G +A+ R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGKSCRGNRICFGRYALQALE-PAWITARQIEAGRRAITRYAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_POPTR (50S ribosomal protein L16, chloroplastic OS=Populus trichocarpa GN=rpl16 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.538e-12
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G +SRGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGISSRGNRICFGRYALQALE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_POPAL (50S ribosomal protein L16, chloroplastic OS=Populus alba GN=rpl16 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.538e-12
Identity = 38/72 (52.78%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G +SRGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGISSRGNRICFGRYALQALE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_MANES (50S ribosomal protein L16, chloroplastic OS=Manihot esculenta GN=rpl16 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.538e-12
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G A RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGIAFRGNRICFGRYALQALE-PAWITSRQIEAGRRAMTRNAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_LOLPR (50S ribosomal protein L16, chloroplastic OS=Lolium perenne GN=rpl16 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.538e-12
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M GK+ RGN ICFGRYALQ L  P      QIE G +A+ R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGKSCRGNRICFGRYALQALE-PAWITARQIEAGRRAITRYAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_LEPVR (50S ribosomal protein L16, chloroplastic OS=Lepidium virginicum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.538e-12
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G++ G +SRGN ICFGRYALQTL  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRLKGISSRGNRICFGRYALQTLE-PAWITSRQIEAGRRAMSRNVR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_AMBTC (50S ribosomal protein L16, chloroplastic OS=Amborella trichopoda GN=rpl16 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.538e-12
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G +SRGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVR+FP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGVSSRGNHICFGRYALQALE-PAWITSRQIEAGRRAMTRYAR-RGGKIWVRVFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_AGRST (50S ribosomal protein L16, chloroplastic OS=Agrostis stolonifera GN=rpl16 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.538e-12
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M GK+ RGN ICFGRYALQ L  P      QIE G +A+ R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGKSCRGNRICFGRYALQALE-PAWITARQIEAGRRAITRYAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_HORVU (50S ribosomal protein L16, chloroplastic OS=Hordeum vulgare GN=rpl16 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.627e-11
Identity = 37/71 (52.11%), Postives = 45/71 (63.38%), Query Frame = 3
Query:  534 PNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            P    F  +H+G+M GK+ RGN ICFGRYALQ L  P      QIE G +A+ R  + RG K WVRIFP+K
Sbjct:    5 PKRTRFRKQHRGRMKGKSFRGNRICFGRYALQALE-PAWITARQIEAGRRAITRYAR-RGGKIWVRIFPDK 73          
The following BLAST results are available for this feature:
BLAST of EY744217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RK16_BRADI7.303e-1251.3950S ribosomal protein L16, chloroplastic OS=Brachy... [more]
RK16_WHEAT9.538e-1251.3950S ribosomal protein L16, chloroplastic OS=Tritic... [more]
RK16_POPTR9.538e-1252.7850S ribosomal protein L16, chloroplastic OS=Populu... [more]
RK16_POPAL9.538e-1252.7850S ribosomal protein L16, chloroplastic OS=Populu... [more]
RK16_MANES9.538e-1252.7850S ribosomal protein L16, chloroplastic OS=Maniho... [more]
RK16_LOLPR9.538e-1251.3950S ribosomal protein L16, chloroplastic OS=Lolium... [more]
RK16_LEPVR9.538e-1252.7850S ribosomal protein L16, chloroplastic OS=Lepidi... [more]
RK16_AMBTC9.538e-1251.3950S ribosomal protein L16, chloroplastic OS=Ambore... [more]
RK16_AGRST9.538e-1251.3950S ribosomal protein L16, chloroplastic OS=Agrost... [more]
RK16_HORVU1.627e-1152.1150S ribosomal protein L16, chloroplastic OS=Hordeu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-B10-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744217 ID=EY744217; Name=EY744217; organism=Citrus sinensis; type=EST; length=951bp
CGCTTCAATTCTCAACTCCAATCGGCTGCTTCTGTCAAAGCGAATTGTAA
ATTGTTTTGATGGGAATCTTCTTCGTTACAATGTCATCAAATCCCTTAGT
TTCGGACCCGTTATTCCAGATCCCGGTCCCAAACTCAGTAGCCTTCAGGC
TAAAACCTTTCTTATGAACCCAACAACTCCAATTTTAACCAGCAGCAGCG
AGGGTAATTCAAGAACCCATTCCAATCGCGATCTCAAAGTCCAACAATCC
GTAGGAGTGATGATGGGTGGCCGTTCGTTTCCATTAATATTCACGAATCC
AAATCCAAATCGCTTGCAAGTTTCGATTGGTGCCGCTCTCTTTTTCGTTT
CGGTGGGCTTGTTCCTGTTCCTGTTGTCCAGCGGACAAATGACTGGTCTC
CAACAGAAGGTTCTGGATCTTAGTCATATACTAACGGAGACAACAAAATC
ATTATTCCTCGGACACGACACTCAACGCTGGATCTCTGATTATTCACCCG
TGACAATGTCGATGTCAATGTTGTTGGCCGGCCCCAAACGAATAAAGTTT
CCCAAACAAACACAAAGGAAAAATGACGGGAAAAGCCAGTCGAGGAAACC
TAATTTGTTTCGGGAGGTATGCTCTTCAAACCCTTCGAACCCCGCTTGGA
TCTAAGCCTGAACAAATCGAAACGGGGCCCCAAGCAATGGTACGGAAAGG
TAAGCCGCGGGGGGAAAAATTTTGGGTGCGGATTTTCCCCGAAAAAACCC
CTCCCGGGCAAAGCCGGCGAAAACCCAAAGGGGCCCTCCGGGAAGGGATT
CCCGGGGTTACGGGGGGAACCCTTTTTTTACCCCCCGGGTAAAAAATTTT
TTTCAAAAATGTGAGGGAATAACCCAAAAAACATTTGGGCGGGAAAGGGA
TTTTTTGTAAAAAAGGGGGCCCCCCCACAAAGAGGCCCCAATAAAAAAAC
A
back to top