EY744217

Overview
NameEY744217
Unique NameEY744217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_NUPAD (50S ribosomal protein L16, chloroplastic OS=Nuphar advena GN=rpl16 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.624e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G + RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGVSYRGNHICFGRYALQALE-PAWITSRQIEAGRRAMARYAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_LACSA (50S ribosomal protein L16, chloroplastic OS=Lactuca sativa GN=rpl16 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.624e-11
Identity = 36/72 (50.00%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G + RGN ICFG+YALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNAICFGKYALQALE-PAWITSRQIEAGRRAMTRNAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_VITVI (50S ribosomal protein L16, chloroplastic OS=Vitis vinifera GN=rpl16 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.734e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G + RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_PHAVU (50S ribosomal protein L16, chloroplastic OS=Phaseolus vulgaris GN=rpl16 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.734e-11
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G +SRGN ICFGRYALQ L  P      QIE G +AM R  + RG + WVRIFP+K
Sbjct:    3 SPQRTRFRKQHRGRMKGISSRGNRICFGRYALQALE-PAWITSRQIEAGRRAMSRNVR-RGGQIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_MORIN (50S ribosomal protein L16, chloroplastic OS=Morus indica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.734e-11
Identity = 37/72 (51.39%), Postives = 44/72 (61.11%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F   H+G+M G + RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKHHRGRMKGISYRGNHICFGRYALQALE-PAWITSRQIEAGRRAMTRNAR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_HELAN (50S ribosomal protein L16, chloroplastic OS=Helianthus annuus GN=rpl16 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.734e-11
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  534 PNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            P    F  +H+G+M G + RGN ICFG+YALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    5 PKRTRFRKQHRGRMKGISYRGNTICFGKYALQALE-PAWITSRQIEAGRRAMTRNAR-RGGKIWVRIFPDK 73          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_GUIAB (50S ribosomal protein L16, chloroplastic OS=Guizotia abyssinica GN=rpl16 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.734e-11
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  534 PNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            P    F  +H+G+M G + RGN ICFG+YALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    5 PKRTRFRKQHRGRMKGISYRGNTICFGKYALQALE-PAWITSRQIEAGRRAMTRNAR-RGGKIWVRIFPDK 73          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_GOSHI (50S ribosomal protein L16, chloroplastic OS=Gossypium hirsutum GN=rpl16 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.734e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G + RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRNRFRKQHRGRMKGISYRGNRICFGRYALQALE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_GOSBA (50S ribosomal protein L16, chloroplastic OS=Gossypium barbadense GN=rpl16 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.734e-11
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 3
Query:  531 APNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            +P    F  +H+G+M G + RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    3 SPKRTRFRKQHRGRMKGISYRGNRICFGRYALQALE-PAWITSRQIEAGRRAMTRNVR-RGGKIWVRIFPDK 72          
BLAST of EY744217 vs. ExPASy Swiss-Prot
Match: RK16_BUXMI (50S ribosomal protein L16, chloroplastic OS=Buxus microphylla GN=rpl16 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.734e-11
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 3
Query:  534 PNE*SFPNKHKGKMTGKASRGNLICFGRYALQTLRTPLGSKPEQIETGPQAMVRKGKPRGEKFWVRIFPEK 746
            P    F  +H+G+M G + RGN ICFGRYALQ L  P      QIE G +AM R  + RG K WVRIFP+K
Sbjct:    5 PKRTRFRKQHRGRMKGISYRGNRICFGRYALQALE-PTWITSRQIEAGRRAMTRYAR-RGGKIWVRIFPDK 73          
The following BLAST results are available for this feature:
BLAST of EY744217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RK16_NUPAD3.624e-1151.3950S ribosomal protein L16, chloroplastic OS=Nuphar... [more]
RK16_LACSA3.624e-1150.0050S ribosomal protein L16, chloroplastic OS=Lactuc... [more]
RK16_VITVI4.734e-1151.3950S ribosomal protein L16, chloroplastic OS=Vitis ... [more]
RK16_PHAVU4.734e-1151.3950S ribosomal protein L16, chloroplastic OS=Phaseo... [more]
RK16_MORIN4.734e-1151.3950S ribosomal protein L16, chloroplastic OS=Morus ... [more]
RK16_HELAN4.734e-1150.7050S ribosomal protein L16, chloroplastic OS=Helian... [more]
RK16_GUIAB4.734e-1150.7050S ribosomal protein L16, chloroplastic OS=Guizot... [more]
RK16_GOSHI4.734e-1151.3950S ribosomal protein L16, chloroplastic OS=Gossyp... [more]
RK16_GOSBA4.734e-1151.3950S ribosomal protein L16, chloroplastic OS=Gossyp... [more]
RK16_BUXMI4.734e-1152.1150S ribosomal protein L16, chloroplastic OS=Buxus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-001-B10-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744217 ID=EY744217; Name=EY744217; organism=Citrus sinensis; type=EST; length=951bp
CGCTTCAATTCTCAACTCCAATCGGCTGCTTCTGTCAAAGCGAATTGTAA
ATTGTTTTGATGGGAATCTTCTTCGTTACAATGTCATCAAATCCCTTAGT
TTCGGACCCGTTATTCCAGATCCCGGTCCCAAACTCAGTAGCCTTCAGGC
TAAAACCTTTCTTATGAACCCAACAACTCCAATTTTAACCAGCAGCAGCG
AGGGTAATTCAAGAACCCATTCCAATCGCGATCTCAAAGTCCAACAATCC
GTAGGAGTGATGATGGGTGGCCGTTCGTTTCCATTAATATTCACGAATCC
AAATCCAAATCGCTTGCAAGTTTCGATTGGTGCCGCTCTCTTTTTCGTTT
CGGTGGGCTTGTTCCTGTTCCTGTTGTCCAGCGGACAAATGACTGGTCTC
CAACAGAAGGTTCTGGATCTTAGTCATATACTAACGGAGACAACAAAATC
ATTATTCCTCGGACACGACACTCAACGCTGGATCTCTGATTATTCACCCG
TGACAATGTCGATGTCAATGTTGTTGGCCGGCCCCAAACGAATAAAGTTT
CCCAAACAAACACAAAGGAAAAATGACGGGAAAAGCCAGTCGAGGAAACC
TAATTTGTTTCGGGAGGTATGCTCTTCAAACCCTTCGAACCCCGCTTGGA
TCTAAGCCTGAACAAATCGAAACGGGGCCCCAAGCAATGGTACGGAAAGG
TAAGCCGCGGGGGGAAAAATTTTGGGTGCGGATTTTCCCCGAAAAAACCC
CTCCCGGGCAAAGCCGGCGAAAACCCAAAGGGGCCCTCCGGGAAGGGATT
CCCGGGGTTACGGGGGGAACCCTTTTTTTACCCCCCGGGTAAAAAATTTT
TTTCAAAAATGTGAGGGAATAACCCAAAAAACATTTGGGCGGGAAAGGGA
TTTTTTGTAAAAAAGGGGGCCCCCCCACAAAGAGGCCCCAATAAAAAAAC
A
back to top