EY661766

Overview
NameEY661766
Unique NameEY661766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length921
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.485e-19
Identity = 55/174 (31.61%), Postives = 98/174 (56.32%), Query Frame = 3
Query:  168 RKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL 677
            R++YV N+P + +  E++ +    G +   E++  K  G++R F FVTM + E+A A + + +  E+ GR I+V   +K  +     +  A      E+ +K+Y+ NL+  V +  L++FFS     + +KV       +S G+GFVSF+++EE EAAI +L+   L G+ +R+
Sbjct:   84 RRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.704e-18
Identity = 55/187 (29.41%), Postives = 103/187 (55.08%), Query Frame = 3
Query:  168 RKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRKRR 728
            R +YV NL  + +   +K  F   G + +++I+  K  KN N+AFV      +A  A+   + +++   I+++ +A +      Q+S+S    +    L+V +L+  V    LR  F    + +S  V+++   G S GYGFVSF ++++A+ A+ S+ G++L GRPLR+ +  K D+ + +N ++R
Sbjct:   75 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ-----SQQSSS----DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNNNYQQR 252          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: NUCL_XENLA (Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 2.907e-18
Identity = 56/188 (29.79%), Postives = 99/188 (52.66%), Query Frame = 3
Query:  129 QTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQ 689
            + K  + +K+   R ++V N+P+S +V E++ +F       D+ I   K G N+  A+V  ++ +EA  A+ +    E+ GR I V+F  +    + Q S +    E   K L V+NLS+      LRE F       ++ +    N+GR+ G+ F+ F++ E+A+ A+ S +  E+ GR +RL+F Q
Sbjct:  312 KNKTAENKKERDSRTLFVKNIPYSTTVEELQEIFE---NAKDIRIPTGKDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGE----KSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEK-----ATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQ 487          

HSP 2 Score: 77.411 bits (189), Expect = 1.264e-13
Identity = 51/182 (28.02%), Postives = 92/182 (50.55%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNR 719
            + V NL +S +   ++ +F    ++     I    G+ + FAF+  +S E+A+ A++  +  E+ GR IR+EF++        R  SA ++     L+V  LS       L+E F  + N   +++V + + G S G+GFV F+T E+A+AA  +++  E+ G  + L F +   D     R
Sbjct:  417 LVVNNLSYSATEDSLREVFEKATSIR----IPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKT----LFVRGLSEDTTEETLKEAFDGSVN---ARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGDSQRGGR 587          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.959e-18
Identity = 56/182 (30.77%), Postives = 94/182 (51.65%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-------KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 698
            IYV N+  +++  E + LFAP G +  + + K   GK++ F FV     E A  AV + + +E++G+ I V  A+K ++   +      A   +         L+V NL  ++ S  L E F   F  ++S  V   + G+S G+GFV F+T EEA  AI+ ++ + + G+PL +   Q+ D
Sbjct:  250 IYVKNIDLAYTEKEFEELFAPFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKP-FGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKD 430          

HSP 2 Score: 69.3218 bits (168), Expect = 3.442e-11
Identity = 48/192 (25.00%), Postives = 92/192 (47.92%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII--RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRKRRMYLRI 743
            I++ NL  +     + + F+  G ++ V++     G+++ F FV   + E AQAA+     + V+G ++  R  +  K    + + S     +     +YV N+          E F A F  ++S  + +  EG+S G+GFV+F   E A  A+  L+ KE+ G+ + +   QK  + +E  +K+   +R+
Sbjct:  157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAAQAAI-----ESVNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELF-APFGKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRL 342          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.477e-18
Identity = 60/183 (32.79%), Postives = 95/183 (51.91%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 701
            IYV NLP       +++LF+  G ++ V++++   G +R F FV     EEAQ AV   + +EVSGR++       RVE   + K+   Q       R     LYV NL   +    LR+ FS      S+KV+ E   G S G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEE 373          

HSP 2 Score: 72.4034 bits (176), Expect = 4.066e-12
Identity = 58/188 (30.85%), Postives = 90/188 (47.87%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNRKRRMY 734
            I++ NL  S     + + F+  G ++  ++   + G +R F FV   + E AQ A+N  +   ++ R +   F   FK  R +R A   AR  +   +YV NL   V    L++ FS  F  + S  V   N G S  +GFV+F   EEA+ A+  ++GKE+ GR L     QK   V   N  +R +
Sbjct:  101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKV---FVGHFKSRR-EREAELGARALEFTNIYVKNLPVDVDEQGLQDLFS-QFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR--VERQNELKRRF 280          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.477e-18
Identity = 54/183 (29.51%), Postives = 97/183 (53.01%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 701
            +Y+ N         +K LF+  G  + V++++   GK++ F FV+    E+A  AV + + +E+SG+II       +VE   + K+   Q      +R     LY+ NL   +    LR+ FS   +  S+KV+ E  +GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.461e-17
Identity = 57/182 (31.32%), Postives = 90/182 (49.45%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 698
            IYV N+  ++S    + LF+P G +  + + K + GK++ F FV     E A  AV + + +E++G+ I V  A+K        KK          A+     L+V NL   + S  L E F   F  ++S  V     G+S G+GFV F T EEA  AI+ ++ + + G+PL +   Q+ D
Sbjct:  235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKP-FGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKD 415          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.198e-17
Identity = 54/183 (29.51%), Postives = 95/183 (51.91%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 701
            +Y+ N         +K+LF   G  + V+++  + GK++ F FV+    E+AQ AV++ + +E++G+ I       +VE   + K+   Q       R     LYV NL   +    LR+ FS      S+KV+ E   GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.198e-17
Identity = 54/183 (29.51%), Postives = 93/183 (50.82%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 701
            +Y+ N         +K +F+  G  + V+++    G++R F FV   + EEAQ AV + + +EV+GR++       R+E   + K+   Q       R     LYV NL   +    LR+ FS      S+KV+ E   G S G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373          
BLAST of EY661766 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.483e-17
Identity = 55/182 (30.22%), Postives = 89/182 (48.90%), Query Frame = 3
Query:  174 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 698
            IYV N+   +S  ++K LF P G +  + + K   GK++ F FV     E A  AV + + +E++G+ I V  A+K        KK          ++     L++ NL   + S  L E F   F  ++S  V     G+S G+GFV F++ EEA  AI+ ++ +   G+PL +   Q+ D
Sbjct:  235 IYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKP-FGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKD 415          
The following BLAST results are available for this feature:
BLAST of EY661766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
RRP2_SPIOL4.485e-1931.6130S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
PUB1_YEAST1.704e-1829.41Nuclear and cytoplasmic polyadenylated RNA-binding... [more]
NUCL_XENLA2.907e-1829.79Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3[more]
PABP_LODEL4.959e-1830.77Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAP1L_HUMAN6.477e-1832.79Polyadenylate-binding protein 1-like OS=Homo sapie... [more]
PABP4_HUMAN6.477e-1829.51Polyadenylate-binding protein 4 OS=Homo sapiens GN... [more]
PABP_CANAL2.461e-1731.32Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP3_HUMAN4.198e-1729.51Polyadenylate-binding protein 3 OS=Homo sapiens GN... [more]
EPABB_XENLA4.198e-1729.51Embryonic polyadenylate-binding protein B OS=Xenop... [more]
PABP_PICST5.483e-1730.22Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-036-G04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY661766 ID=EY661766; Name=EY661766; organism=Citrus sinensis; type=EST; length=921bp
TTCGTCGACCCACGCGTCCGTGTATAAAGCTTCCCCATTCTTCCAATTCT
ACTCCTTCACTTATCTATAATTTTCCAACACGAAATGTTTGCCTTCAAGT
ATGCTCAACTTTGCAAGACACAACAGTACAAACAAAACCAGAACAAACAC
AGAAACAGAATATAAGGAGAAAGATATATGTGTTTAATTTGCCTTGGTCT
TTCTCTGTTGCAGAAATCAAGAATCTCTTTGCCCCATGTGGAACTGTTGT
AGATGTTGAGATTATAAAGCACAAAGGTGGGAAAAACAGAAACTTTGCAT
TTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGCTGCCGTTAATCAATTC
GACACTCAGGAAGTCTCTGGGAGGATTATAAGGGTTGAGTTTGCAAAGAA
ATTCAAGAAACCACGACCTCAACGTTCTGCAAGTGCCCCTGCTAGAGAAA
CACAACATAAGCTTTATGTGTCGAATCTTTCTTGGAAAGTTAGATCTACT
CATCTCAGAGAATTTTTTTCAGCTAATTTTAATCCTGTTTCCTCCAAGGT
TGTTTTTGAGAGCAATGAAGGAAGATCCGCTGGGTATGGCTTTGTCTCAT
TTGCCACAAAGGAAGAAGCAGAAGCAGCAATTTCTTCTTTGGATGGCAAG
GAGTTGATGGGGCGACCACTTCGTTTGAAATTCGGTCAAAAGAATGATGA
TGTATCAGAGAGTAACAGGAAGAGGAGGATGTATCTGAGGATCAATCTGC
AGAGTCATAGCTATTCCAATTTTTGGTGGNTTGCAGATTACAGCGCCATC
AAATCAGACACGCATTGCAGTATCGGTGAGCCAGCAGCAGCAGCGACAGT
GTCGAGTGCAACATATGCGTCGGGCCGTCCCATTGCAGGATGGCTGGGCT
GGCCCGGTGCTCGGGCAACAA
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